Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00621 ATGGCCGATTTTAAACAGATTAACCCCTTAAAGCGGAGCTTCGAAGGCATGATGAGTTCAGAGTCGAATATGGCCGTTGATGGTGTGGCTGAAGTCAAGGAAGCTGTTTCAGAGACTTCGAAGGATTTTGATCCTAGAAGTTATCAAAGTAAGGTTTTTGAAGTGGCTCGTGAGAAGAACACGATCGCCGTGTTGGATACCGGTGCGGGTAAAACAATGATCGCAGTAATGCTTATAAAGGAAATAGGGCAAGCTATTAAAATCAACGGGGATAAACCGTTGATTATATTTCTGGCACCCACTGTTCACCTTGTAAATCAGCAATTTAAGGTAATAAAGATCCACACAAGCTTCAAAGTGGAGGAGTACTATGGAGCTAAGGGGATCGACGAGTGGAATGCTCAATGCTGGAAAAAAGAAACAAGCGAACACGAAGTAATGGTTATGACCCCCCAAATTTTATTGGATGCTTTGAGGAAGGCATTCTTGAATCTAGACATGATATGTCTTATTGTATTTGACGAGTGTCATCGTGCCACTGGAAATCATCCTTACACAAAAATAATGAAGGAATTCTATCACAAGTCTGGGAACAAGCCAAAGATTTTTGGAATGACTGCATCCCCTGTAATTAGAAAAGGTGTCTCGTCAAGCAAGGATTGTGAGGATCAAATATCAGCACTTGAAAGCATCTTGGATTCCAAGATTTACACCGTCGAGGACAGAACCGAACTGGAGATATTTGTTCCCTCTGCGAAAGAAATAAATAGATACTATAACCCTAACATGTTTTTCCATGAAGATTTAAAAATTAAGTTGGAATCTTCATGGTCTAAGTTCGATGCTTTGTTGGTGCAAAAGTCATTGCATGTTCAGTTCAAAGATACTGATGAAACTTTTCGGGCCTTGAGAAAGAAATTGTCCAATTACCATGCAAAGATTTTGTACTGCCTAGATGAACTTGGGCTCATATGTGCTCATGAGGCTGCTAAAGTCTGTGCAGAAACTGTTCGTATTTCAAACACCACAGAGGGATGTGAATTGTATAGAGCAAGTTTTGTGCAGTGTAGATATTTCGTTGAAGAAGTTTTACATGTAATTGAAGAATATTTGCCACGTGACGATGAAATTTTTTTCAATGTAGGATTTGACTATTTAGAGGCAATTAAAACGGGTTATATATCTCCAAAGTTATATGAACTTGTTCAAATATTTCAATCATTTGGAGTAACTAAGCAAGTACTTTGCCTCATATTTGTAGAAAGAATAATAACTGCTAAAGTAATTGAAAGAATCGTAAGGAGAGTTAGTTATTTATCTCATTTCACGGTTTCATATTTAACTGGTGGGAATTCATCAGTAGATGCACTAACACCAAAAATGCAAAAGAAGACGTTGGATTCATTTCGTTGTGGGAAGGTAAACTTGTTATTCACTACTGATGTGGCTGAAGAGGGAATTCATGTACCAAACTGCTCTTGTGTGATACGTTTTGACCTACCAAAAACCGTTCGCAGTTATGTCCAGTCACGAGGACGTGCTCGACAAAATGATTCCCAATATGTCCTTATGCTTGAAAGGGGAAACATCAAACAAAGGGATATGTTGTTTGATATTATCAGAAGTGAGCATTCTATGACGAACTCCGCTTTAAATAGAGACCCCGATGCTTGCGTTTCTATATTATGTTCCATAAAGGAAACAACTGCATATTTTGTGGAATCAACTGGAGCATCAGTTACAGCAGATTCTAGTGTTAGTCTAATATACAAATATTGTGAAAAACTTCCTGGAGATAGGTACTTCATTCCAAAGCCCATTTTTCAGTTTTCATTGTCTGAAGGGTATGCGTGTACATTAACATTACCACCTAATGCGGCATTTCAAAGAATGGAAGGTCCTATAGGTAGAAATTCTCATGAATCGAAGCAGCTTGTATGCTTGGAAGCCTGTAAAAAATTGCATCAAATAGGCGCTCTTGATGATCATCTTCTTCCTTACATCGAAGAACCTTTGGAAAATGACGTCATTGGAAAAACTAAAGATTCTGCTTCAGGTGCAGGAACAACAAAAAGAAAGGAATTACATGGGACAACCACTGTTCGTGCTTTATCTGGAGAGTGGGGAGACAAAAATGACGGTGTCACTTTGCAGGCCTATCAAATAGATTTCTCTTGTGATCAGGTTGGCGAGTTCTATTCTGGATTTGTTCTATTGGTTGAGGCAAAACTAGATGATGATGTTGCAAATGCAGAAGTGGAACTTTTCTTGATTCCTAACAAATTGGTGAAGTCTTCTGTTTCTCCATGTGGACAAGTCCACTTGGATACAGAACAGGTGAAGAAATCAAAAAATTTCCAGGAATTTTTCTTTAATGGTTTATTCAGCAAATTGTTTATTAGATCCAAATCATCTGGACTACAAAGAGAATTTTTACTCAATGGAGAAAATAAATCATTGTGGAGCAATTCTAATATGTATTTGCTTTTACCCTGCGAGTCAACAATTCCAAGTCAAGAATCTTTGAGAATTGACTGGAGGAGAATTAATGCATGTGCTTCGGTGGTTGAATTTTTGAAGAATAATTCTTTGGGAGGTGACAAGTATTATTCCATCAGCAGCAGTGAAAATTCATCATTTTGTAGCACCAGCTCGTTTGAGATGGAGTGCAAGAGCTCAGACACTATCCACTTGGCTAATAGTGCTGTTGATAGACACGACCTTAAAGATATGGTGGTTTTGGCAATTCATACAGGAAGAATTTACTCTGTTCTTGATGTCATGATTGATATATCTGCTGAGAGTTCATTTGATACAGATTCTAATGCAGTGCCATCAAAATTTACTAGCTTCAGAGATTACTTCAATAAGAAGTACGGGATTGTGCTGCAATATCCAGGACAGCCTTTGTTGCGATTAAAGCAAAGTCATAACCCACACAACCTTCTTCTTGCGAAGTCCAAATATGAAGGTGGTACCTTGTGTAAGAAGATACTTGAAGCTGGCTGTAACATGGTTGTAGAAAAGCCACTAAATCATGTCCACATGCCTCCTGAGCTTTTAGTCAATATCGATTTACCAATAAATGTTTTAAAATCTTTTTACTTGCTACCTTCTTTGATGCACCGGTTGGAGTCTCTAATGCTGGCCAGCCAGCTTAGAAAAGAAATTGCTTGTCATCCTAGTAATCGCCATATATCAAGCTCTCTGATTCTGGAAGCACTTACATCACTTAGATGTTGTGAAAACTTTTCTCTGGAGCGTTTGGAATTGCTGGGGGACTCTGTACTGAAATATGCTGTGAGCTGCTGTCTTTTTCTTAAATACCCCAAGAAACATGAAGGCCAATTATCTGCCTGTAGATCGTGGGCTGTGTGTAACTCAACACTGCATAAATTGGGAACCAACCGCAAGTTACAGGGTTACATAAGAGATAATGCATTTGATCCCCGTCGTTGGGTTGCTCCAGGACAGCGTTCTTTACGCCCTGTTCCTTGTACGTGTGGGGTGGATACTTCCGAAGTGCCTCTCGAAAAAAAGTTTGAAACTGAAAATATCTCTGTTATGGTTGGAAAGACTTGTGATAGAGGTCACAGGTGGATGTGCTCTAAGACTATAGCAGATTGTGTTGAAGCACTTATTGGAGCTTATTACGTTGGCGGTGGATTAAGTGATGCTGTTACAGTAATGAAATGGTTGGGCATAGATGTTGAATGTGAGCCCACATTGGTTGATGAAGCCATTCGTAATGCATCTCTATGGTGTTACACCCCCAAAGTTAATGAGTTCCAGATGCTGGAGTCAAAGCTTGACTACTGCTTTTCTGTCAAGGGTCTTTTATTGGAGGCCATTACACATGCATCTCAGCAAGAATTAGGGGCTGGTTATTGCTATCAGAGGCTTGAATTTTTGGGTGACTCTGTTTTGGACCTGCTTATAACGTGGCATCTCTTTCAAAGCCACACAGACATCGATCCTGGGGAATTGACAGACTTACGTTCGGCTTCTGTTAATAATGAAAATTTTGCTCAAGTTGCAGTAAGGCATAACCTTCAGCAGCATCTTCAGCATGGTTCTGGGTTGCTTTTAGAGCAAATAACAGAATACGTGAAGTCTGTTTCAGAGCTGCACGACAACAAGAAGCCACTCCAAGGGACTAAATGTCCCAAGGCTCTTGGAGACGTGGTGGAGAGTATTGCAGCGGCAATACTAGTTGATACCAAACTCAACCTTGATAATGTCTGGAGAGTATTTAAACCACTACTCTCTCCTATTGTTACACCCGAGAAGCTTGAATTACCTCCATTGCGTGAACTAAATGAATTATGTAGTCATCTTGGTTATTTTATAAAAGAGAATTGTACAAATAAGGGAGAAATGGTTCACGTTGAGCTTCTGTTACAACTGAAAGATGTTCTCTTGGTAGGAGAGGGATGTGAGAGGAACAGAAAGGCCGCAAAAGGACAAGCGGCTCTTCATTTGTTGAAGGACCTGGAGGGAAGAGGTATTTCACACTCCCGATCTGTTAATAGGAGGAAGAAACATGAAATGAAATCTTTTGATAGTTCCTCGTCTCTGGACGTGAATATCAACAGCTGCCAGCCATCAAATGATGGCAATTCCAGAGAACAAATCTCCCATAAAAAGCAAAAGACAACAGAAGGCCTGTTGCCCATGGAACCAACTGCAGATACTTCCTCTTCTAAGGATTGTTCTGAAAAAGTGTGCGACTCCAAGCTCACTGCTCCAGTGATTTTATCGATTAACATGCAGAAAGGTGGTCCTCGATCATCTCTTTATCAGCTCTGTAAAAGATTGCAATGGCCGATCCCTAGTTTCAATTCAACAGAACACAAGTCAAGATCTCCAATTGAATTTGGTGAGGGCTCCGAAAAAAGGAAGGGTTTCAACAGTTTTGTATCACGAATTACCTTGCACATACCAAACTCTGGTGTTATTGAACTCACAGGAGATCAAAGAGCTGATAAGAAGAGTTCTCTGGACTCTGCAGCACTCCTCATGCTTTACGAGCTTGGAAGACAGGGGAAATGCATCATTGGCAATTTGTAA 5070 0.3988 MADFKQINPLKRSFEGMMSSESNMAVDGVAEVKEAVSETSKDFDPRSYQSKVFEVAREKNTIAVLDTGAGKTMIAVMLIKEIGQAIKINGDKPLIIFLAPTVHLVNQQFKVIKIHTSFKVEEYYGAKGIDEWNAQCWKKETSEHEVMVMTPQILLDALRKAFLNLDMICLIVFDECHRATGNHPYTKIMKEFYHKSGNKPKIFGMTASPVIRKGVSSSKDCEDQISALESILDSKIYTVEDRTELEIFVPSAKEINRYYNPNMFFHEDLKIKLESSWSKFDALLVQKSLHVQFKDTDETFRALRKKLSNYHAKILYCLDELGLICAHEAAKVCAETVRISNTTEGCELYRASFVQCRYFVEEVLHVIEEYLPRDDEIFFNVGFDYLEAIKTGYISPKLYELVQIFQSFGVTKQVLCLIFVERIITAKVIERIVRRVSYLSHFTVSYLTGGNSSVDALTPKMQKKTLDSFRCGKVNLLFTTDVAEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNDSQYVLMLERGNIKQRDMLFDIIRSEHSMTNSALNRDPDACVSILCSIKETTAYFVESTGASVTADSSVSLIYKYCEKLPGDRYFIPKPIFQFSLSEGYACTLTLPPNAAFQRMEGPIGRNSHESKQLVCLEACKKLHQIGALDDHLLPYIEEPLENDVIGKTKDSASGAGTTKRKELHGTTTVRALSGEWGDKNDGVTLQAYQIDFSCDQVGEFYSGFVLLVEAKLDDDVANAEVELFLIPNKLVKSSVSPCGQVHLDTEQVKKSKNFQEFFFNGLFSKLFIRSKSSGLQREFLLNGENKSLWSNSNMYLLLPCESTIPSQESLRIDWRRINACASVVEFLKNNSLGGDKYYSISSSENSSFCSTSSFEMECKSSDTIHLANSAVDRHDLKDMVVLAIHTGRIYSVLDVMIDISAESSFDTDSNAVPSKFTSFRDYFNKKYGIVLQYPGQPLLRLKQSHNPHNLLLAKSKYEGGTLCKKILEAGCNMVVEKPLNHVHMPPELLVNIDLPINVLKSFYLLPSLMHRLESLMLASQLRKEIACHPSNRHISSSLILEALTSLRCCENFSLERLELLGDSVLKYAVSCCLFLKYPKKHEGQLSACRSWAVCNSTLHKLGTNRKLQGYIRDNAFDPRRWVAPGQRSLRPVPCTCGVDTSEVPLEKKFETENISVMVGKTCDRGHRWMCSKTIADCVEALIGAYYVGGGLSDAVTVMKWLGIDVECEPTLVDEAIRNASLWCYTPKVNEFQMLESKLDYCFSVKGLLLEAITHASQQELGAGYCYQRLEFLGDSVLDLLITWHLFQSHTDIDPGELTDLRSASVNNENFAQVAVRHNLQQHLQHGSGLLLEQITEYVKSVSELHDNKKPLQGTKCPKALGDVVESIAAAILVDTKLNLDNVWRVFKPLLSPIVTPEKLELPPLRELNELCSHLGYFIKENCTNKGEMVHVELLLQLKDVLLVGEGCERNRKAAKGQAALHLLKDLEGRGISHSRSVNRRKKHEMKSFDSSSSLDVNINSCQPSNDGNSREQISHKKQKTTEGLLPMEPTADTSSSKDCSEKVCDSKLTAPVILSINMQKGGPRSSLYQLCKRLQWPIPSFNSTEHKSRSPIEFGEGSEKRKGFNSFVSRITLHIPNSGVIELTGDQRADKKSSLDSAALLMLYELGRQGKCIIGNL* 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00621 1689 SUPERFAMILY PAZ domain 906 1021 IPR036085 GO:0005515
Eupl09g00621 1689 Pfam Ribonuclease III domain 1299 1407 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 Pfam Ribonuclease III domain 1087 1221 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 533 IPR027417 -
Eupl09g00621 1689 Gene3D - 1601 1680 - -
Eupl09g00621 1689 ProSiteProfiles Ribonuclease III family domain profile. 1050 1222 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 CDD DEXHc_dicer 43 241 - -
Eupl09g00621 1689 Gene3D Dicer dimerisation domain 580 677 IPR038248 -
Eupl09g00621 1689 PANTHER DICER-RELATED 59 1505 - -
Eupl09g00621 1689 Pfam Helicase conserved C-terminal domain 412 514 IPR001650 -
Eupl09g00621 1689 SUPERFAMILY RNase III domain-like 1262 1428 IPR036389 GO:0004525|GO:0006396
Eupl09g00621 1689 FunFam Dicer-like 104 896 1022 - -
Eupl09g00621 1689 ProSiteProfiles PAZ domain profile. 907 1025 IPR003100 GO:0005515
Eupl09g00621 1689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 555 IPR001650 -
Eupl09g00621 1689 MobiDBLite consensus disorder prediction 1505 1571 - -
Eupl09g00621 1689 ProSiteProfiles Ribonuclease III family domain profile. 1263 1408 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 CDD RIBOc 1069 1233 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 FunFam Dicer-like 104 1045 1234 - -
Eupl09g00621 1689 SMART ultradead3 41 245 IPR014001 -
Eupl09g00621 1689 Gene3D Ribonuclease III domain 1046 1234 IPR036389 GO:0004525|GO:0006396
Eupl09g00621 1689 Gene3D Ribonuclease III domain 1256 1429 IPR036389 GO:0004525|GO:0006396
Eupl09g00621 1689 Gene3D - 386 552 IPR027417 -
Eupl09g00621 1689 ProSitePatterns Ribonuclease III family signature. 1299 1307 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 SMART helicmild6 430 517 IPR001650 -
Eupl09g00621 1689 SMART PAZ_2_a_3 881 1049 IPR003100 GO:0005515
Eupl09g00621 1689 Pfam Type III restriction enzyme, res subunit 37 209 IPR006935 GO:0003677|GO:0005524|GO:0016787
Eupl09g00621 1689 CDD RIBOc 1279 1429 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 227 IPR014001 -
Eupl09g00621 1689 SMART riboneu5 1278 1431 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 SMART riboneu5 1069 1240 IPR000999 GO:0004525|GO:0006396
Eupl09g00621 1689 FunFam Endoribonuclease dicer-like 1 388 551 - -
Eupl09g00621 1689 Pfam Dicer dimerisation domain 585 669 - -
Eupl09g00621 1689 MobiDBLite consensus disorder prediction 1522 1541 - -
Eupl09g00621 1689 Gene3D paz domain 892 1022 - -
Eupl09g00621 1689 Gene3D - 39 277 IPR027417 -
Eupl09g00621 1689 CDD SF2_C_dicer 393 525 - -
Eupl09g00621 1689 FunFam Endoribonuclease dicer-like protein 40 279 - -
Eupl09g00621 1689 Pfam PAZ domain 904 1046 IPR003100 GO:0005515
Eupl09g00621 1689 SUPERFAMILY RNase III domain-like 1042 1240 IPR036389 GO:0004525|GO:0006396
Eupl09g00621 1689 FunFam Endoribonuclease dicer-like 1 1257 1429 - -
Eupl09g00621 1689 FunFam Endoribonuclease dicer-like 1 580 675 - -
Eupl09g00621 1689 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 585 674 IPR005034 GO:0016891
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00621 Eupl-Chr9 14794422 14822451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00621 281 514 Eukaryotic Initiation Factors Gene Family AT1G72730 23.045 2.26e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00621 K11592 - nnu:104600522 2367.04