Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00586 ATGTCCTCTCACGACCGAGCCGTTGCTCTCCTCGCCCAACTCGCTCTAGCAACCGATGGCGCCGTTGCAGGCCTAGCCCTAGCTTACGTAGCCGTACAGACCTGGCGCAATTACAACTCCAACTCCTCTGCCCTTGACAAAATCAGCCGAGCCCCAACCGTTCGTATAGCGGATCTCCGCTCCCTCCTCTCCTCCTCGGACGATGAATCTGAATCCTCCGACGGCAAGCTCATCGTCGTCCGTGGTATCGTAGAGGCGAAATCGGCCATTGATGGGAATTGGCGGAGCTTGAGGCCTAACGTTCTGGTCTCTCACGATTCCGAGAGAGCCGTCGTGTTGCAGAGAACTCAGACGTGTATATACAATGAGTGGAGGGGTCTATTGGGATGGACTTCAGATTTACGCACTGTTTTGGCGAAATCCTGGAAAGACCAGAAGTCTACCTCATTACGAACGGTTCCTTTTATTCTTGTTGAAAGTGGTCAGTGGCCACAATTTGATTATGTGATTGTTAACTTGGATGATTCAAGACATCCTCTACCTCTGACAACAGTTTACCATCAGCTGCGGCCAGTTCATGCGTCTCCATACACATTCCTTCAGGCAATTTTCGGCCATGCGTACCCTGTTGGTCTGCTGGATGAAGAGAAAATTCTTCCACTGGGAAAGGAAATCAGTGCAGTTGGCATTTGCAGTTCGCAAGATGGAATTCCTCAGATTAAGTCAAGCGATGACCTTCCCTATTTCTTGTCTGACATGACTAAGGATGAGATGGTGGTAGATCTTGCCTTGAGGACGAAGGTTCTGTTTTGGTGTGGCATTATTCTTGGGTCACTGTCACTTGGCATAGTTGGCTATGCTGTCACAAGGAACTGGAGAAGATGGAAAGAATGGAGGCAGCAGAGGCAGGTCCAACGATCAAGAGATGCTGCTGCTGCCGAAATTCAAGCTGATGAAGAGGTCGGGGATGTTCCTGATGGGGAGTTGTGCGTGATATGTCTCACGAGGAGGAGGAGGTCTGCTTTTGTTCCTTGTGGGCATCGGGTTTGCTGCCAGGGATGCGCCCTATCAGTTGAGCGTGATTCCGCACCCAAGTGTCCTTTATGTAGGCAGACCATCCGGACCTCTGTCAGAATCTATGATTCTTGA 1149 0.5048 MSSHDRAVALLAQLALATDGAVAGLALAYVAVQTWRNYNSNSSALDKISRAPTVRIADLRSLLSSSDDESESSDGKLIVVRGIVEAKSAIDGNWRSLRPNVLVSHDSERAVVLQRTQTCIYNEWRGLLGWTSDLRTVLAKSWKDQKSTSLRTVPFILVESGQWPQFDYVIVNLDDSRHPLPLTTVYHQLRPVHASPYTFLQAIFGHAYPVGLLDEEKILPLGKEISAVGICSSQDGIPQIKSSDDLPYFLSDMTKDEMVVDLALRTKVLFWCGIILGSLSLGIVGYAVTRNWRRWKEWRQQRQVQRSRDAAAAEIQADEEVGDVPDGELCVICLTRRRRSAFVPCGHRVCCQGCALSVERDSAPKCPLCRQTIRTSVRIYDS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00586 382 Pfam Zinc finger, C3HC4 type (RING finger) 328 375 - -
Eupl09g00586 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 382 IPR044247 GO:0004842
Eupl09g00586 382 Pfam E3 Ubiquitin ligase 139 283 IPR022170 GO:0004842|GO:0006996|GO:0016567
Eupl09g00586 382 SUPERFAMILY RING/U-box 329 376 - -
Eupl09g00586 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 381 IPR013083 -
Eupl09g00586 382 CDD RING-HC_SPL2-like 325 371 - -
Eupl09g00586 382 SMART ring_2 330 369 IPR001841 -
Eupl09g00586 382 ProSiteProfiles Zinc finger RING-type profile. 330 370 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00586 298 381 C3H Transcription Factor Family AT1G73950 30.952 5.14e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00586 K15688 - nnu:104600560 554.673