Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00561 ATGGGTAGACGCCCTTGTTGTTCTAAGGAAGGTTTGAATAGAGGAGCTTGGACTGCTCTTGAAGACAAAATCCTCAGAGATTATATCAAAATCCATGGTGAAGGAAGATGGAGAAACCTCCCAACTAAAGCAGGTCTTAAAAGATGTGGGAAAAGTTGTAGACTTCGTTGGTTGAATTATTTGAGACCTGATATCAAGAGGGGAAACATATCTCATGATGAAGAAGAACTCATAATCAGGCTTCACAAGCTCTTGGGGAACAGATGGTCCTTAATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATCAAGAATTATTGGAATACTAATCTAGGAAAGAAGGTTCAAGGTCACTATACATCCGCGTCGACTTCGACTTATAATAAGCACTCAAACCAGTCTAACGAGAAGAAGAAGAAGAAGAAGCTCGAAGTTCAACAGTCCATTGAAGCAGCAGTACCGGTGGTGCGAACCAAGGCATTAAGGTGCACCAAGGTTTTCCTCGCTCCACAGCCACGCAAAGTTGAACATCTTGAGACTAATGTGGCAAGAGAACCTTCCTTAGTCGAAGATTTTGTGAACGATAAAGCAGTGGAATCGGAATCGTATGACGGGTTGTCGTCCTTCACTCCCCGGGAAGATAATAATTCAAGCAATTTTATGGTGGATCCCAGTATTGGAGAGATTTGCCTGTCTGAACTTCTCGATTCCGACTTCTCGAAGCTCTTTGATTTCGATAATGCGACAGGAAGAGAGATTAACAACGATAACAACTGTGAATTATCACCATCTTCGGATCATTGTCTCTTGTTCCCTGATGAAATGCTGGAGGATTGGACAGGAAGCGATTGTGTTCAACCAGATGTTGCTTCAGATATCCAATCTTTGGCTGCTTTTCTTGATTCAGAAGAGGATTGGCTAGCTAGGTGA 933 0.4298 MGRRPCCSKEGLNRGAWTALEDKILRDYIKIHGEGRWRNLPTKAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVQGHYTSASTSTYNKHSNQSNEKKKKKKLEVQQSIEAAVPVVRTKALRCTKVFLAPQPRKVEHLETNVAREPSLVEDFVNDKAVESESYDGLSSFTPREDNNSSNFMVDPSIGEICLSELLDSDFSKLFDFDNATGREINNDNNCELSPSSDHCLLFPDEMLEDWTGSDCVQPDVASDIQSLAAFLDSEEDWLAR* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00561 310 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Eupl09g00561 310 CDD SANT 16 61 IPR001005 -
Eupl09g00561 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl09g00561 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl09g00561 310 FunFam MYB-related transcription factor 13 66 - -
Eupl09g00561 310 MobiDBLite consensus disorder prediction 120 143 - -
Eupl09g00561 310 SMART sant 13 63 IPR001005 -
Eupl09g00561 310 SMART sant 66 114 IPR001005 -
Eupl09g00561 310 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl09g00561 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl09g00561 310 Gene3D - 71 149 - -
Eupl09g00561 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl09g00561 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl09g00561 310 CDD SANT 71 112 IPR001005 -
Eupl09g00561 310 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 188 - -
Eupl09g00561 310 Gene3D - 14 66 - -
Eupl09g00561 310 FunFam Transcription factor TT2 70 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00561 Eupl-Chr9 13788340 13790312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00561 1 144 MYB Transcription Factor Family AT2G16720 62.500 3.15e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl09g00561 Myb_DNA-binding 9.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00561 K09422 - nnu:104609338 404.831