Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00560 ATGGGTAGGAGACCCTGTTGTGTGAAAGAGGGAGTAAACAGAGGGGCATGGTCTGCTCGGGAAGATCTAATCCTTGTTAACTACATTAATATTCATGGAGAAGGGAAATGGAGAGACGTTCCTCAAAAATCTGGTTTGAGGAGATGTGGGAAGAGTTGCCGGCTCCGATGGTTGAATTATCTGAGGCCAGATATCAAGAGAGGCAACATCTCAGTGGAAGAAGAAGAGCTTATCATCAGACTCCATAAGCTCCTTGGTAACAGGTGGTCTCTCATAGCAGGAAGATTACCGGGGAGAACAGACAATGAAATCAAGAACTATTGGAACACGAACTTGTGCAAGAAGCTCCAAGTTCAGATGGCGTCACAACAGTCAGACAAAGAACTTAATAAATCGAAAGGAAAGAAGGTTATGGACAATTCCTTAGTTGAGGAGGTGCCCAAAGGGACCCATGTGATCAGAACTAAAGCCGCACGTTGCACTAAGGTTATCCTCCCACCACAAGAAGGAAATCAGGTGATTAAGAAAAATGTAGGTCCCACTAGGGATTGGGAGGACTTATCGTATTCGACCACCCTACAAGACGATGATTCTTCGAATTTTCTGATGGACTTCAACATTGGAGAACATTTCATATCCGACGTTCAGAATAACTCCGATTTCTTACCAATTTGTGGTAATGGAATACAAGAAAATGATAATTTGCTAGGTATAGATGATGGGAGCAATAACACGTCTTCATGTTCTTTTGATCATCCCTTCTCAACCTATGAAGCAATGCTCAAAAATTGGAAGGAGCGTGACCATCTTCAGCCCAATGAAGCTTCAGACCTTAAAACGCTGGCGTCTTTTCTAGATTCTGAAGATGAATGA 873 0.4284 MGRRPCCVKEGVNRGAWSAREDLILVNYINIHGEGKWRDVPQKSGLRRCGKSCRLRWLNYLRPDIKRGNISVEEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKKLQVQMASQQSDKELNKSKGKKVMDNSLVEEVPKGTHVIRTKAARCTKVILPPQEGNQVIKKNVGPTRDWEDLSYSTTLQDDDSSNFLMDFNIGEHFISDVQNNSDFLPICGNGIQENDNLLGIDDGSNNTSSCSFDHPFSTYEAMLKNWKERDHLQPNEASDLKTLASFLDSEDE* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00560 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl09g00560 290 SMART sant 66 114 IPR001005 -
Eupl09g00560 290 SMART sant 13 63 IPR001005 -
Eupl09g00560 290 Gene3D - 71 141 - -
Eupl09g00560 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl09g00560 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl09g00560 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 172 - -
Eupl09g00560 290 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Eupl09g00560 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl09g00560 290 CDD SANT 16 61 IPR001005 -
Eupl09g00560 290 FunFam MYB-related transcription factor 13 66 - -
Eupl09g00560 290 FunFam Transcription factor TT2 70 140 - -
Eupl09g00560 290 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl09g00560 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl09g00560 290 Gene3D - 14 66 - -
Eupl09g00560 290 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00560 Eupl-Chr9 13760916 13762434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00560 1 133 MYB Transcription Factor Family AT4G09460 62.406 1.01e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl09g00560 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00560 K09422 - ming:122075826 322.783