Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00559 ATGGGGAGGAGTCCATGTTGTTCAAAGGAAGGTCTCAACAGAGGAGCCTGGACTGTCTTGGAAGATAAAATCCTGGTGGCTTATATTAAAGCCCATGGTGAAGGGAAATGGAGGAACCTCCCCAAGAGAGCTGGTTTGAAGAGATGTGGGAAGAGTTGTAGGCTTCGATGGTTGAATTATCTGAGACCAGATATCAAGAGGGGCAACATATCCCATGATGAAGAGGAGCTCATCATAAGACTCCATAATCTTCTTGGGAATAGATGGTCGCTAATAGCAGGAAGATTGCCAGGGCGAACAGACAATGAAGTCAAGAACTACTGGAACACCACTTTATCAAAGAAGGTTCAAGCTCAAAATCCCACTTCATCACCATATAAACAAAGACCCACAACCAAACCCAAGGAAAAAAAGCCCATGCCCCAACAATTGATCACTGACCAACCGGCGCCACCTTCTAAAAGGATTCAACCCCAAGTAATTCGAACCAAGGCCTCAAGATGTACCAAGGCAGTCGTCCCTCCACCACATCAACTGGTTCCTTCTCTAAGCACCATTCGACGAACCATGGACTCGACGACCAAGAATTCATTTGATCTTCCAACCCATCAGAACAATTTAGTGACTCTTCAAGATTTGGATAATTTGATTATGGATTTTGGAATTGGAGAGCTATGTGTGTCATACTCTCCGAACGCCGATTTCTTGTGCCTAGCAAGTGATGAATTTCAAGTTAGCGATACTGCGACAGGGGACGACGATAACAACCATAACTTGTCGACAGCTTCCGATCATTCTCTACTGTTCGACGAACCGATGCTCGAAGATTGGACGGAAAATGATCGTCTCGAACCACATGCGACGTTGGATCTCGGAACTTTGGCTTCTTTTCTTGACGCAGAGGAATGGCCATGA 915 0.4546 MGRSPCCSKEGLNRGAWTVLEDKILVAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEVKNYWNTTLSKKVQAQNPTSSPYKQRPTTKPKEKKPMPQQLITDQPAPPSKRIQPQVIRTKASRCTKAVVPPPHQLVPSLSTIRRTMDSTTKNSFDLPTHQNNLVTLQDLDNLIMDFGIGELCVSYSPNADFLCLASDEFQVSDTATGDDDNNHNLSTASDHSLLFDEPMLEDWTENDRLEPHATLDLGTLASFLDAEEWP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00559 304 CDD SANT 16 61 IPR001005 -
Eupl09g00559 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl09g00559 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 182 - -
Eupl09g00559 304 FunFam MYB-related transcription factor 13 66 - -
Eupl09g00559 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl09g00559 304 CDD SANT 71 112 IPR001005 -
Eupl09g00559 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl09g00559 304 FunFam Transcription factor TT2 70 140 - -
Eupl09g00559 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl09g00559 304 MobiDBLite consensus disorder prediction 111 156 - -
Eupl09g00559 304 MobiDBLite consensus disorder prediction 111 129 - -
Eupl09g00559 304 Gene3D - 71 143 - -
Eupl09g00559 304 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Eupl09g00559 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl09g00559 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl09g00559 304 Gene3D - 14 66 - -
Eupl09g00559 304 SMART sant 66 114 IPR001005 -
Eupl09g00559 304 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00559 Eupl-Chr9 13729649 13731303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00559 1 147 MYB Transcription Factor Family AT2G16720 61.224 2.49e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl09g00559 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00559 K09422 - nnu:104609339 329.717