Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00557 ATGCGGGGATCTATGATGATAAATGATTATGTAAAAGTTAAAAAGGAGACACTTGAGGACTGCTTAACATGCCCTCTTTGTTTCGATCTCCTTATGGAGGCTACAACAATCTGTGTCTGCCTTCATACATTTTGCAAGGAATGTATATATCAAAAGTTTGAGGACGATGAAACAAATTGCTGCCCTATGTGTAATGTCTACTTAGGTTGCTATCCTGAAGAGAAACTAAGACCCGACAATAATTTGCAAGATCTTAGAATGAAAGTTTTTCCATTAAAGAAGACAAAAGAACTGGAAAATATGTCCACCTTGAAAACCACTAGCAGAAAAAAGAAGAGATCACTATCATCTCTTGTTATCAGTACAAGTCCAAAAGTGACGAAACCTGGTACAAGTAGAACAAGAGCTGTGACCAGGAAGTCAAGAATGTCACGGGGAACTGTGAGCAAACTTCATGATGACAGAGATGTCATGGTAGAAAATAATCATCTTGGACCGAGTTACTCACGTGCACGCTTCAATAAGTTCTCCTTGGTTTATAAGAAGCAGCGGATTTCAGTTGACAAGGAACCATCTAAAGTTGCTGGCACTTCAACTGGACCTCCAACACAGGCCTCTTTCAGTGAAAAAGATAAAGGTCCCAATTGGGAGAGGCTGACTGTTCTTGCAGAAACTGCAAATGACTTAAATATGCCTTTGCCGGACCTTCCTGCATTCAATTCAGAAAGCAATGTTAAATTGAATTTGACGAGTAGAAAGAGGCTGAAGAGAAGAGCTCGTGAATCCTTATCTGATCAAAGCAACAATGATTTGAATCTTGAAAATAGTATTATACCAGGAGAAAGACCAATACCTAGTTCAGATGCTGCTGTCAAGTTCATTGACTCAAGAGAACAAAGTACTACAGCTTCAACTGCATATGGGTTTCCTGATAATTCTCTGAAAAGATTATATCCTGTGTGGTTTACTCTGCTTGCCTGTAATGATAAGAAACGAGATCCTTACCCGCAAATACCAAAGTGTTATATCAGAATCAAGGACGGAAATATACCAGTGTCCTATGTCAACAAATACCTTGTGCAGAAGCTCAATCTCAGACATGAATCCGAGGTTGAAGTCATGTGTTGTGGCCAGACATTGGTTCCAAGTGCAACACTGAAAAGCCTAGTTGATATTTGGGTACGGTTTGCATCCGACATAGATGGATCAATTTGTGAAAGTAACTCCAACAGACACAACTTCGTGATGGTCTTGACGTATAGGAGAACATAA 1272 0.3962 MRGSMMINDYVKVKKETLEDCLTCPLCFDLLMEATTICVCLHTFCKECIYQKFEDDETNCCPMCNVYLGCYPEEKLRPDNNLQDLRMKVFPLKKTKELENMSTLKTTSRKKKRSLSSLVISTSPKVTKPGTSRTRAVTRKSRMSRGTVSKLHDDRDVMVENNHLGPSYSRARFNKFSLVYKKQRISVDKEPSKVAGTSTGPPTQASFSEKDKGPNWERLTVLAETANDLNMPLPDLPAFNSESNVKLNLTSRKRLKRRARESLSDQSNNDLNLENSIIPGERPIPSSDAAVKFIDSREQSTTASTAYGFPDNSLKRLYPVWFTLLACNDKKRDPYPQIPKCYIRIKDGNIPVSYVNKYLVQKLNLRHESEVEVMCCGQTLVPSATLKSLVDIWVRFASDIDGSICESNSNRHNFVMVLTYRRT* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00557 423 SMART ring_2 24 64 IPR001841 -
Eupl09g00557 423 MobiDBLite consensus disorder prediction 258 279 - -
Eupl09g00557 423 Pfam Zinc finger, C3HC4 type (RING finger) 24 64 IPR018957 GO:0046872
Eupl09g00557 423 MobiDBLite consensus disorder prediction 123 148 - -
Eupl09g00557 423 SUPERFAMILY RING/U-box 16 85 - -
Eupl09g00557 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 118 IPR013083 -
Eupl09g00557 423 Gene3D - 306 399 - -
Eupl09g00557 423 ProSitePatterns Zinc finger RING-type signature. 40 49 IPR017907 -
Eupl09g00557 423 MobiDBLite consensus disorder prediction 192 210 - -
Eupl09g00557 423 MobiDBLite consensus disorder prediction 187 215 - -
Eupl09g00557 423 ProSiteProfiles Zinc finger RING-type profile. 24 65 IPR001841 -
Eupl09g00557 423 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 9 422 IPR044807 GO:0004842
Eupl09g00557 423 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00557 Eupl-Chr9 13658837 13663375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00557 1 346 C3H Transcription Factor Family AT2G30580 33.056 2.04e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00557 K16277 - psom:113350941 339.347