Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00553 ATGGGTATTGGACATGGTCGTGGAGGGGTGGCGGGGCCCTCCACCTCGCAACCGGGCAACGGGAGGCGGTTCCCTCTCGCGGCGCAACCGGAGATCATGAGAGCTGCGGAGAAGGACGATCAGTATGCCTCTCACGTTTACGATGCTTGTCGCGACGCCTTTCGCCATTTATTTGGTACACGAGTTGCTGTAGCTTACCAGAGTGAGACAAAATTGTTGGGCCAGATGCTTTATTATGTATTGACAACAGGTTCGGGTCAGCAGACACTCGGAGAAGAATATTGTGACATTACTCAGGTTGCTGATTCTTATGGTCTTCCTCCAACACCAGCAAGGCGTGCTCTCTTCATTGTCTACCAGACAGCGATTCCTTATCTTGCAGAAAGAATCAGCTCTAGAATGGCCGCGCGTGGTATCATCCTTGCCGATTCACAGTCTGATGAGCTGTATGGTAACAATACTCATGGGAGAAATCAAGTTCAATCTTCTGTCACGACTGAAAGCTTGTCTTCCTCCACAACAGGGGTATCTATGTCAGCTCATACGAGGTTGAAGGAGAAATTCTATAGATTATGGTTGTATGCGGTTCAGAAATGGCCTACTGTGCTTCCATTTGCTCGCGAGATTTTACAATTGGTTCTCCGTACCAACCTCATGTTCTTTTACTTTGAAGGTCTGTATTATCATATATCAAAACGTGCTGCAGGAATTCGTTATGTGTTCATTGGGAAGCCATTAAATCAACGGCCTAGATACCAGATACTGGGAGTGTTCCTTTTAATCCAGCTATGTATCATTACTGCTGAAGGGCTGCGGCGCAGCAATTTATCTTCTATTGCAAGTTCAGTCCATCAGACATCACATGGGGCCCACCAGACATCAGCAGGACGAGGCATGCCTGTTTTGAATGAAGAAGGCAATTTGATTACTACCGATTCAAATCTTGACAATAGCAGTTGGGCCTCTGATTCCATGGCTATTTCAGAGTCCCAAGCAACAGGTGGTATCAGCAAATGTACCCTCTGTCTCAGTACTCGCCAACACCCAACAGCCACACCTTGTGGTCATGTCTTCTGCTGGAACTGCATTATGGAATGGTGCAACGAAAAGCCTGAATGTCCTCTCTGTCGTACTCCTGTAACCCATTCAAGTTTAGTTTGTATATATCATTCAGACTTCTAA 1182 0.4662 MGIGHGRGGVAGPSTSQPGNGRRFPLAAQPEIMRAAEKDDQYASHVYDACRDAFRHLFGTRVAVAYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVADSYGLPPTPARRALFIVYQTAIPYLAERISSRMAARGIILADSQSDELYGNNTHGRNQVQSSVTTESLSSSTTGVSMSAHTRLKEKFYRLWLYAVQKWPTVLPFAREILQLVLRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPLNQRPRYQILGVFLLIQLCIITAEGLRRSNLSSIASSVHQTSHGAHQTSAGRGMPVLNEEGNLITTDSNLDNSSWASDSMAISESQATGGISKCTLCLSTRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPVTHSSLVCIYHSDF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00553 393 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Eupl09g00553 393 Pfam Pex2 / Pex12 amino terminal region 39 274 IPR006845 -
Eupl09g00553 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 390 IPR013083 -
Eupl09g00553 393 SMART ring_2 339 376 IPR001841 -
Eupl09g00553 393 ProSiteProfiles Zinc finger RING-type profile. 339 377 IPR001841 -
Eupl09g00553 393 Pfam Ring finger domain 338 377 IPR001841 -
Eupl09g00553 393 SUPERFAMILY RING/U-box 338 382 - -
Eupl09g00553 393 CDD RING-HC_PEX10 337 388 - -
Eupl09g00553 393 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 25 391 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Eupl09g00553 393 MobiDBLite consensus disorder prediction 1 24 - -
Eupl09g00553 393 FunFam Peroxisome biogenesis factor 10 313 390 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00553 333 389 C3H Transcription Factor Family AT4G28270 35.616 8.21e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00553 K13346 - msin:131227089 647.891