Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00549 ATGCCTGTAAATCTCACACCTAACGCAATCTCGGCTGTAAATGGAGGTGATGTGAACTTAAAGCCCCTTGTTCAGGTCTTAGACATCAAGCTTATAGGAACTTCACAAGATCGGTATCGGCTTCTCTTATCCGATTCCGTTTCGACTCAGCAAGCAATGCTGGCGACTCAGCTCAACGATCGTGTGAAGACTGGTAGAGTTCGTAAGGGATCGGTGGTTCAATTGATCGATTATATCTGCAGTACTGTTCAAACTCGCAAGATTATTGTGGTACTGAACATGGAAACCATAATCCCAGATTGTGAGATAATTGGGAACCCGAAACTGTTCATGGAATCTGATTCGTCTGATAACAAGTCTGAACACCCACCACGGATTTCCAATAATAATTCGGTTCCACAGAATAGTAATAAGACGCAGAGCTTCCGCCCAACTGTTCAACCTCCGTACCAACCTCCTCCAAATTATAGAAATCATGGGGCCATTGTGAAGAATGAGGCCCCTGCCCGAATAATCCCAATTGCTGCTTTAAATCCTTATCAGGGGCGATGGGCAATCAAGGCAAGAGTAACTGCTAAAGGAGATCTCCGCCGCTACAACAATGCCAGGGGAGATGGGAAGGTCTTCTCCTTCGACCTCCTTGACTCTGAAGGAGGAGAAATACGAGTGACCTGCTTCAATGCTGTAGTTGACCGTTTTTACGATTCTATTGAGGTTGGTAAAGTCTACTTGATATCAAAGGGAAGCTTAAAACCTGCTCAGAAGAACTTCAACCATCTTAAGAATGAATGGGAGATATTCTTGGAGGCGACCTCAACAGTGGAGCTTTACCCGGATGAAGACGACTCAATACCGAAGCAGCAGTTCTCTTTCAGATCTATCAGTGAGATTGAGAATGCCGAGAACAGTTCCATATTGGATATTATTGGTATTGTGACATCTGTTAATCCTTCTGTCCCTATCTTGAGGAAGAACGGTATGGAAACTCAGAGAAGAATTCTGAACCTAAAGGATGGATCTGGCCGGAGTGTTGAGCTAACCCTCTGGGGGGAGTTCTGCAACAAGGAAGGTAAGGAGCTGCAAGAGATGCTTGATTCTGGTTTTTCCCCAGTTTTAGCTGTTAAGGCTGGGAGGGTAAATGACTTCAGTGGGAAATCAATAGGGACGATTTCTACCAGCCAGCTCTTCATAAATCCAGATTTCCCAGAGGCCCGTAGCTTGAGAGAATGGTTTGACAGAGGGGGAAAGAATGCTGCTTCTCTGTCCATCTCTAGAGACACTATGCCAGGGGGGCAAAAGAATGAGATTCGTATAACGGTGTCTCAGATTAAAGATGAAGGTCTTGGAAGGGCAGATAAACCTGATTGGGTCACAGTAAAGGCATCAGTATCATTCATTAAGACAGATAATTTCTGTTACACAGCTTGCCCATTGATGATTGGAGATAGACAGTGCTGTAAGAAAGTGGTGAGGTCAGGAGACACAAGATGGCAATGCGAGAGGTGCAATCAAGACTTTGAGGAGTGTGATTACAGATATCTTCTTCAAGCTCAAGTGCAAGACCATACAGGACTGACTTGGGTGACGGCTTTCCAGGAGTCGGGGGAGGAGATCTTGGGCTGCTCAGCAAAGGAGTTGTACTTGTTGAAATACGAAGAGCAAGATGACGTAAGGTTTGAAGAAATTATCCGTCGTAGTCTTTTTAACCAGCATCTGTTCAGGCTTAAAATCAAAGAAGAAGTCTATGGTGAAGAACAGAAGGTGAAGATAACTGTTACTAAGGCAGAGAAAGTTAATTCATCTGCCGAGAGTAGATACCTACTTGATTTGATTTCGAAGGTCTCTCTATAA 1851 0.4435 MPVNLTPNAISAVNGGDVNLKPLVQVLDIKLIGTSQDRYRLLLSDSVSTQQAMLATQLNDRVKTGRVRKGSVVQLIDYICSTVQTRKIIVVLNMETIIPDCEIIGNPKLFMESDSSDNKSEHPPRISNNNSVPQNSNKTQSFRPTVQPPYQPPPNYRNHGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVVDRFYDSIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVELYPDEDDSIPKQQFSFRSISEIENAENSSILDIIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLWGEFCNKEGKELQEMLDSGFSPVLAVKAGRVNDFSGKSIGTISTSQLFINPDFPEARSLREWFDRGGKNAASLSISRDTMPGGQKNEIRITVSQIKDEGLGRADKPDWVTVKASVSFIKTDNFCYTACPLMIGDRQCCKKVVRSGDTRWQCERCNQDFEECDYRYLLQAQVQDHTGLTWVTAFQESGEEILGCSAKELYLLKYEEQDDVRFEEIIRRSLFNQHLFRLKIKEEVYGEEQKVKITVTKAEKVNSSAESRYLLDLISKVSL* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00549 616 SUPERFAMILY Nucleic acid-binding proteins 288 417 IPR012340 -
Eupl09g00549 616 FunFam Replication protein A subunit 170 279 - -
Eupl09g00549 616 NCBIfam replication factor-a protein 1 (rpa1) 5 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Eupl09g00549 616 Gene3D - 282 422 IPR012340 -
Eupl09g00549 616 CDD RPA1_DBD_A 173 276 - -
Eupl09g00549 616 Gene3D - 4 111 IPR012340 -
Eupl09g00549 616 FunFam Replication protein A subunit 422 614 - -
Eupl09g00549 616 Gene3D - 423 614 IPR012340 -
Eupl09g00549 616 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Eupl09g00549 616 CDD RPA1_DBD_C 440 613 IPR047192 -
Eupl09g00549 616 Gene3D - 170 279 IPR012340 -
Eupl09g00549 616 FunFam Replication protein A subunit 283 421 - -
Eupl09g00549 616 SUPERFAMILY Nucleic acid-binding proteins 437 614 IPR012340 -
Eupl09g00549 616 CDD RPA1_DBD_B 305 412 - -
Eupl09g00549 616 Pfam OB-fold nucleic acid binding domain 185 266 IPR004365 GO:0003676
Eupl09g00549 616 FunFam Replication protein A subunit 4 111 - -
Eupl09g00549 616 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Eupl09g00549 616 PANTHER REPLICATION FACTOR A 1, RFA1 184 594 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Eupl09g00549 616 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Eupl09g00549 616 MobiDBLite consensus disorder prediction 122 145 - -
Eupl09g00549 616 MobiDBLite consensus disorder prediction 112 153 - -
Eupl09g00549 616 Pfam Replication protein A OB domain 294 398 IPR031657 -
Eupl09g00549 616 Pfam Replication factor-A C terminal domain 456 607 IPR013955 -
Eupl09g00549 616 SUPERFAMILY Nucleic acid-binding proteins 170 284 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00549 Eupl-Chr9 13582609 13585644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00549 26 613 Core DNA Replication Machinery Family AT2G06510 70.407 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00549 K07466 - nnu:104600598 1023.46