Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00546 ATGGAGACACTGGCTGGAGTAGAGGAAAATGATGAACAGCGGGTTGAAGAGATTTGGGATTCTAAAAGTAGTGCTTGTCTATCTTTGTCAAAGCAGATTGCAGATACTATTGTTTACACACTCGTTCGGCTCTTGTCCTATCTTCAGGTTGAAGGTGATGGCAGACTAGTACCTGCTACAGATGACGAAGTTATGGAGGTTGAGAACTTGCTTGAAGACGAGAAGAGTGAAATGACTTTAGTTGCAGATACCGGACAGACTGAAGGATGCTCTTCAAGTAAAGGGTTCTCCTCTGTGAAGGCTCATTTAGAGGGCTCAGGGATTTCGCATTCTAAGAATACAGAAGTTGATGCGAAAACGTTAAATGCTCGGGTTGAGTATATCGAGGTGATGTTGCAAAAGGTTAAACAGGAAGAGAGGCTCCGGTTATCATGTGGATCTCCTGATAATTCTTCTGATCACGTGAATGTAGATGGCCAGCATTCTGATCAGCATGATCAATTGCTAGCTAGTGATGAGAAGACCCAAACTGATAAGTCTTTGCAGGAAACTGTTCCTGTGGTCTCACCCAGATTGAATGATGGCTGTACTAATCAATCAGGGAGCGTTGAGACATGCTCAAAATCTACAGATGGGCTGTTAGTTAGTGGATCTTCAGCTTCTGCCACCTGCACCAGTTCTGAGCCTGATTTTTCTATCATAAAGGGGGAAATATGCTTGGATAATCTATCAATAAAAGAACTCCACGAGACTTTCAAAGCAACATTTGGGCGAGAAACTTCTGTCAAGGACAAGTTGTGGCTTAAAAGGCGGATTGCCATGGGTTTGACTAATTCTTGTGATGTTTCAACCACAAGTTTTATAATTAAAGATAATACTTTGGTTAAAAAGAAAGTTAAAGAAGAAGCACATTGTAGGATGGAGAGCAGTAAGAGTGCGGGTGGTACTCTGCCTAAGGATCAAATCGATGGAGTAATTAATGATAACTGCAGCGAGTCACCAACTAGCCCCAGTAGCCAAACGGAAGTTCGACAGGATGTATCTGGAAAGAGATTGAGAAAACCTAAAACGGAATATGAATGCAAAAGTGAAGCTCTGCATACCGAACAAACGGCGGCTAAAAGAGCTAGAAAGCCCACTAGGCGATATATTGAAGAATTTTCGGAAGTTGACACAAGGGAATGCAGTGGGAGGTTGTTGTCTTCCTTTAAAAATTCTGGACATGGTCAGTTCTCTCCAAAATCTCTAGTCAGGCCGGTTTGCAATGTTGGTTCAGACGAGGCAGCTCTTGTCACCAGGCAGGATTCTTTTGGAGGTTCTGGTGTTCAGGTCCCATATGTTTCTAGGGTGCGAAGAGGGCGTCCCAGGAAAAACTTTATGGCTCTTATGAAATACCATCCCAGTGGCATGGGCATGGCGGCCAAACTAGTGAAGAAGGCTCTTGGTGTGCGTGTTTCTCGACAAGATAGTGAAAGTGGAGGCAAAACTTGGAAAGTTAGACCTACTCCTAGACCAATTCAACAGCCGGTAGTTGCTGAAACAGAAAGAGAGAAGCAGAGTGTAGTTACATGCACGGGTGAGCAGCGGCAAGATGTGGAGGTGGGAAATCTAGATTTATCTGGAAATAATTCAGATGATAATGTAGCAATTGTGCCAACTGCAAAAGGTGGGATCAGAAGGAAGCATCATCGAGCATGGACTCTCTGCGAGGTTATGAAGCTGATTGAGGGGGTAGCTAGGTATGGAGCTGGAAGGTGGTCTGAGATTAAGCGACTTGCCTTTGCATCCTGTACATACCGCACCTCGGTTGATCTCAAGGATAAGTGGAGGAACCTGCTGAGAGCTAGTTTTGCACAAGCACTGACAGACAAAGTGGCGGGGAACTTGCGGAAACATGTTTCTATGCCCATTCCTGCTCCCATTCTATTACGCGTAAGAGAACTTGCAGAGATACATGCACAGGCTGCACCGGGTCTGAGCTCGGGCAAATTGGTTGGTCAGAGTGGGAAAAGTGTACATGAGACAAGGTCCGGGTACTTGTAA 2043 0.4479 METLAGVEENDEQRVEEIWDSKSSACLSLSKQIADTIVYTLVRLLSYLQVEGDGRLVPATDDEVMEVENLLEDEKSEMTLVADTGQTEGCSSSKGFSSVKAHLEGSGISHSKNTEVDAKTLNARVEYIEVMLQKVKQEERLRLSCGSPDNSSDHVNVDGQHSDQHDQLLASDEKTQTDKSLQETVPVVSPRLNDGCTNQSGSVETCSKSTDGLLVSGSSASATCTSSEPDFSIIKGEICLDNLSIKELHETFKATFGRETSVKDKLWLKRRIAMGLTNSCDVSTTSFIIKDNTLVKKKVKEEAHCRMESSKSAGGTLPKDQIDGVINDNCSESPTSPSSQTEVRQDVSGKRLRKPKTEYECKSEALHTEQTAAKRARKPTRRYIEEFSEVDTRECSGRLLSSFKNSGHGQFSPKSLVRPVCNVGSDEAALVTRQDSFGGSGVQVPYVSRVRRGRPRKNFMALMKYHPSGMGMAAKLVKKALGVRVSRQDSESGGKTWKVRPTPRPIQQPVVAETEREKQSVVTCTGEQRQDVEVGNLDLSGNNSDDNVAIVPTAKGGIRRKHHRAWTLCEVMKLIEGVARYGAGRWSEIKRLAFASCTYRTSVDLKDKWRNLLRASFAQALTDKVAGNLRKHVSMPIPAPILLRVRELAEIHAQAAPGLSSGKLVGQSGKSVHETRSGYL* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00546 680 CDD SANT_TRF 564 614 - -
Eupl09g00546 680 SMART sant 562 615 IPR001005 -
Eupl09g00546 680 Gene3D - 553 659 - -
Eupl09g00546 680 MobiDBLite consensus disorder prediction 144 166 - -
Eupl09g00546 680 MobiDBLite consensus disorder prediction 326 345 - -
Eupl09g00546 680 MobiDBLite consensus disorder prediction 346 365 - -
Eupl09g00546 680 SUPERFAMILY Homeodomain-like 564 618 IPR009057 -
Eupl09g00546 680 MobiDBLite consensus disorder prediction 305 365 - -
Eupl09g00546 680 ProSiteProfiles Myb-like domain profile. 566 613 IPR001005 -
Eupl09g00546 680 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 679 - -
Eupl09g00546 680 Pfam Myb-like DNA-binding domain 565 613 IPR001005 -
Eupl09g00546 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 558 617 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00546 Eupl-Chr9 13551472 13566814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00546 566 624 Single Myb Histone (SMH) Gene Family AT1G72740 42.623 1.69e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl09g00546 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00546 - - msin:131251686 806.208