Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00539 ATGCTGACTTGCATCGCTTGTTCGAAGCAGCTTGGCGGTGGATCGCTTCACCAACCCGAAGACGAAGAGACCGCCGGGACGCCGAGCACTAAGCATGCCATCAAAGCTCTCACTGCTCAGATCAAGGACATGGCGTTGAAGGCGTCAGGGGCGTATCGACACTGCAAACCATGTTCGGGATCGTCAGGTCATCATCAACACCAGAACTACGCCGAGTCTGAGGTCGCTTCGGCTTCGGAGAGGTTTCACTGCTCGTATCGTCGAACCGGGAGCTCGAGCTCGACGCCCAGGCTGTGGGGGAAAGAAATGGAGGCGAGATTGAAGGGGCTTTCAAGCGGCGAAGGGACCCCACCTTCGATGAGCGGTCGGGCTGAATCGGTTGTGTTCATGGAGGAAGAAGAACCCAAGGAGTGGGTCGCGCAGGTCGAGCCTGGTGTTCTCATTACCTTCGTCTCTCTACCTCAGGGAGGCAACGATCTCAAGCGGATTCGCTTCAGTCGAGAGATGTTTAACAAATGGCAAGCTCAAAGGTGGTGGGCCGAGAACTATGACAAGGTCATGGAGCTCTACAATGTCCAGAGGTTCAACCGCCAAGCTGTCCCACTTCCAACCCCACCGAGGTCCGAAGATGAGAGCTCAAAGATTGAATCAGCGGAGGACAGCCCGGTTACACCTCCATTGAGCAAAGAACGCCTACCCCGCAACTTTCACCGTCCAATGGGTATGGGCTACTCTTCCTCAGATTCACTTGACCACCACCCTATGCAATCACGCCATTACTATGACTCAGGTGGTCTTGCTTCAACCCCAAAACTCTCAAGCATCAGCGGGGCCAAGACTGAGACATCTTCATTGGATGCTTCTATGAGGACAAGCTCATCAAGGGAGGCTGACCGCTCGGGAGAGCTCTCTGTTAGCAATGCCAGTGATGTGGAGACCGAGTGGGTTGAACAGGATGAGCCAGGAGTCTACATTACTATCAGAGCGTTGCCTGGTGGTACCAGGGAGCTGAGGCGTGTCAGATTCAGCCGAGAAAGGTTTGGGGAGATGCATGCGAGGGTGTGGTGGGAAGAGAACCGAGCCAGAATACACGAACAGTACTTGTGA 1107 0.5465 MLTCIACSKQLGGGSLHQPEDEETAGTPSTKHAIKALTAQIKDMALKASGAYRHCKPCSGSSGHHQHQNYAESEVASASERFHCSYRRTGSSSSTPRLWGKEMEARLKGLSSGEGTPPSMSGRAESVVFMEEEEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAVPLPTPPRSEDESSKIESAEDSPVTPPLSKERLPRNFHRPMGMGYSSSDSLDHHPMQSRHYYDSGGLASTPKLSSISGAKTETSSLDASMRTSSSREADRSGELSVSNASDVETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARVWWEENRARIHEQYL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00539 368 MobiDBLite consensus disorder prediction 267 291 - -
Eupl09g00539 368 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Eupl09g00539 368 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 368 IPR044532 -
Eupl09g00539 368 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Eupl09g00539 368 Pfam Transcription factor regulating root and shoot growth via Pin3 312 367 IPR013591 -
Eupl09g00539 368 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Eupl09g00539 368 MobiDBLite consensus disorder prediction 298 312 - -
Eupl09g00539 368 MobiDBLite consensus disorder prediction 199 314 - -
Eupl09g00539 368 ProSiteProfiles BRX domain profile. 313 368 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00539 Eupl-Chr9 13364815 13370402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00539 1 368 Major Intrinsic Protein MIP AT1G31880 48.329 6.96e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00539 - - nnu:104600612 694.115