LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl09g00505	ATGAAAAAGAAGGGGAACTTAAACCCTAAGCTCAAGCTTGCTCTCCCTCGTCCAGACGAGGTTTCCTTCGCTAAATTCCTGACTCAGAGCGGTACGTTTAAAGACGGTGATCTACTCGTCAATAAGGATGGAGTTCGAATTGTTCCTCAAAAGGAAGATGAGGCGCCACCCCCTATAAAGCCATCAGACAACCAGTTGAATCTAGCTGACATGGACATGATTAAAGTAATTGGAAAGGGCAGTAGTGGGATGGTGCAACTGGTGCGCCACAAATGGACTGGCCAGTTTTTTGCTCTTAAGGCCATCCAAGTTAATTTTCAAGAGGACCTTGTTAGACTGATTGCGCAGGAACTGAAAATTAATAATTCCACACAATGTCCATATGTTGCTGTGTGTTACCAGTCTTTCTATGATAATGGTGTCATATCAATAATCTTAGAGTACATGGATGGTGGCTCACTTGCGGATTTTCTGAAGAAAGTCAAATCAATTCCAGAGCCGTATCTTGCTGCCATCTGTAAGCAGGTGCTCATGGGTTTGTTGTATCTTCATCATGAAAAACACATCATCCACAGGGACTTGAAACCTTCTAATTTATTAATCAATCACAGTGGAGAAGTAAAGATAACCGACTTTGGTGTGAGTGCTACACTGACAACCACCTCTGGCGAGCGGAATACCTTTGTTGGCACTTACAACTATATGTCTCCAGAGAGAATCAGTGGAGGCAAATATGGCCACAAAAGTGATATTTGGAGCTTGGGACTTGTTTTGCTAGAGTGTGCAACAGGTCGCTTTCCATATTCTCCACCCGAACAAGAGGGAGGATGGAACAATTGTTATGAGCTCTTGGAAGCAATTGTTGATGAGCCACCGCCTTATGCACCTTCTGACCAATTTTCCCCTGAGTTCTGCTCGTTTATTTCCTCATGCGTGCAGAAAAATGCAAAGGATAGACAGGCAGCCCATGAACTTATGGAACATCCTTTCATCAGCATGTATAAAGACTTGGATGTCGATCTTGCATCTTACTTCACCGATGCAGGGTCTCCATTAGCCACGTTTACAACACCTGCCTGA	1080	0.438	MKKKGNLNPKLKLALPRPDEVSFAKFLTQSGTFKDGDLLVNKDGVRIVPQKEDEAPPPIKPSDNQLNLADMDMIKVIGKGSSGMVQLVRHKWTGQFFALKAIQVNFQEDLVRLIAQELKINNSTQCPYVAVCYQSFYDNGVISIILEYMDGGSLADFLKKVKSIPEPYLAAICKQVLMGLLYLHHEKHIIHRDLKPSNLLINHSGEVKITDFGVSATLTTTSGERNTFVGTYNYMSPERISGGKYGHKSDIWSLGLVLLECATGRFPYSPPEQEGGWNNCYELLEAIVDEPPPYAPSDQFSPEFCSFISSCVQKNAKDRQAAHELMEHPFISMYKDLDVDLASYFTDAGSPLATFTTPA*	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl09g00505	359	CDD	PKc_MAPKK_plant_like	69	334	-	-
	Eupl09g00505	359	Gene3D	Transferase(Phosphotransferase) domain 1	151	351	-	-
	Eupl09g00505	359	SUPERFAMILY	Protein kinase-like (PK-like)	59	337	IPR011009	-
	Eupl09g00505	359	ProSitePatterns	Protein kinases ATP-binding region signature.	77	100	IPR017441	GO:0005524
	Eupl09g00505	359	Gene3D	Phosphorylase Kinase; domain 1	49	150	-	-
	Eupl09g00505	359	Pfam	Protein kinase domain	74	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00505	359	ProSiteProfiles	Protein kinase domain profile.	71	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00505	359	SMART	serkin_6	71	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00505	359	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Eupl09g00505	359	PRINTS	Tyrosine kinase catalytic domain signature	146	159	IPR001245	GO:0004672\|GO:0006468
	Eupl09g00505	359	PRINTS	Tyrosine kinase catalytic domain signature	183	201	IPR001245	GO:0004672\|GO:0006468
	Eupl09g00505	359	PRINTS	Tyrosine kinase catalytic domain signature	249	271	IPR001245	GO:0004672\|GO:0006468
	Eupl09g00505	359	FunFam	Mitogen-activated protein kinase kinase 6	41	150	-	-
	Eupl09g00505	359	FunFam	Mitogen-activated protein kinase kinase 6	152	350	-	-
	Eupl09g00505	359	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	17	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl09g00505	Eupl-Chr9	12257580	12265538	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl09g00505	28	353	MAP Kinase Kinase Gene Family	AT4G26070	69.605	1.81e-173	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Eupl09g00505		Pkinase	6.3e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl09g00505	K20603		-	psom:113347716	591.267