LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl09g00489	ATGGATCCTTACCGTTCGTCCGATGACTACGATGATCACCTTCCTGCCACTCACACTACAGCCGTGGCGATTGATAAGGACAAGAACAGCCATTTTGCTGTTAAATGGGCCGTTGATCATCTCCTTATCAACAACCCACGTATCGTCCTCATCCATGTCAGGACCCGAAACATGCGATACTGTGAGGGTTCTGGTTCGAACGAGAACTCCCCCGAAGCCAACCGTCAACAATCTGATTCCGAGATGCAACAAATTTTCCTTTCCTACAGTGGATTTTGTGCTCGCAAAAAGATCCAAATGAAGGAGGTGGTCCTTGATGACACGGATATTTCCAAGGCACTTGTTGATTATGTCAAGAACAACCGCATCAACAATATTGTGCTGGGTGCATCAACCAGGAATGCTTTTACAAGGAAATTCAGGAACCCGGATGTGCCAACTTGCTTAAACAAATCTGCACCAGACTTCTGTACGGTGTATGTTATATCAAAGGGGAAGGTGGCGACCTTCCGATCAGCGACTCGGACCGCACCCACTAATGCAGCTCCACCCAGGCAACCATCTCGAATGGGGTTTCGACCTGATTACTCCGACCCTGAGGATTCCATCAAATCCCCTTTTGCCAAGGGAAGGAGAAGTGGAGGTTCTAAGAGGTCTGCTGCTAGGAGCATGGGAGCCGTCGATATCCAATCAATCGACTTCACGGCGGAAAATCTAGAATTCTCACTCACGTCCGAAAGCCCAAGTAGCTCCATCTTCTCACAGTCCTCAATGGAGGCCGAGATGAAGAGATTGAAACTAGAGCTAAAGCAAACCATGGAGATGTACAGCACAGCTTGCAAAGAGGCACTCCAGGCCAAACAGAAGGCTCAAGAGCTTCATCAATGGAAGATGGAGGAACGTCGAAGATTTGAGGAAGCAAAGCTTGCTAAAGGGGAAGCCCTTGCAATGGCCGAGGCGGAGAAGGCGAAGTGCAAGGCGGCCACGGAAGCTGCAAAGGCTGCACAAAGGCTAGCCGAACTGGAGGCCCAGAGGAGGAAGAACTTGGAGATGAAGGTCAAGCATGACGCAGAAGAGACGGAGAAAGTATTGGATTATATGGCAAACAACGAAATTCGATCCAGAAAGTACAGCATAGAAGAGATACAAGTCGCCACTGATAGCTTCTCAGATTCGTTGAAGATCGGCGAAGGTGGATACGGGCCAGTGTATAGAGGCACTCTCGATCAGACCCCAGTTGCCATTAAGGTTTTAAGATCAGATGTAGCACAAGGAAGGAAGCAATTCCAACAAGAGGTTGAGGTATTGAGCTGCATCAGACATCCAAACATAGTTTTATTGCTAGGCGCCTGTCCAGAATCTGGATGCCTGGTCTATGAATACATGTACAATGGTAGCTTAGAAGACAGGCTTTTCCGGATGGGTGACACTCCTACTATCCCATGGAGGACCCGATTCAAAATAGCCACAGAGATTGCGACGGGGCTTCTATTCCTTCACCAGACGAAGCCAGAGCCCTTTGTGCACAGGGACCTCAAGCCGGCTAACATCCTCCTAGACCACAACTACGTGAGCAAGATCAGCGATGTTGGTCTGGCACGGTTAGTCCCACCCTCTGTAGCTGATAGCATCACACAATATCACATGACAACGGCTGCAGGGACGTTTTGTTACATAGACCCAGAGTACCAACAAACAGGCATGTTGGGAACCAAGTCGGATATATACTCTTTCGGGATAATGTTGCTCCAAATAATCACAGCCAAGTCTCCAATGGGTCTTAGCCACTACGTGGAGAGGTCCATAGAAAAAGGAACCTTTGAGACGGTGCTCGATCCAACTGTGCCAGACTGGCCTGTGGAAGAGGCTCTATCATATGCAAGGATGGCACTAAAGTGTGCCGAGCTACAGAGGAAGGACAGACCAGACCTCAAGTCAGATATACTGCCGGAGCTCAACCGGCTATCAAATCTTGGGAATAGTGAAGCAAGTAATATCAGCAGCGATAGTTATGGACCACGTTCTTACGATGTGAATTCACATCCAACTGTATCAGATGAGTCAGAGGTCGTGCAGAATATACCCACATAA	2091	0.4854	MDPYRSSDDYDDHLPATHTTAVAIDKDKNSHFAVKWAVDHLLINNPRIVLIHVRTRNMRYCEGSGSNENSPEANRQQSDSEMQQIFLSYSGFCARKKIQMKEVVLDDTDISKALVDYVKNNRINNIVLGASTRNAFTRKFRNPDVPTCLNKSAPDFCTVYVISKGKVATFRSATRTAPTNAAPPRQPSRMGFRPDYSDPEDSIKSPFAKGRRSGGSKRSAARSMGAVDIQSIDFTAENLEFSLTSESPSSSIFSQSSMEAEMKRLKLELKQTMEMYSTACKEALQAKQKAQELHQWKMEERRRFEEAKLAKGEALAMAEAEKAKCKAATEAAKAAQRLAELEAQRRKNLEMKVKHDAEETEKVLDYMANNEIRSRKYSIEEIQVATDSFSDSLKIGEGGYGPVYRGTLDQTPVAIKVLRSDVAQGRKQFQQEVEVLSCIRHPNIVLLLGACPESGCLVYEYMYNGSLEDRLFRMGDTPTIPWRTRFKIATEIATGLLFLHQTKPEPFVHRDLKPANILLDHNYVSKISDVGLARLVPPSVADSITQYHMTTAAGTFCYIDPEYQQTGMLGTKSDIYSFGIMLLQIITAKSPMGLSHYVERSIEKGTFETVLDPTVPDWPVEEALSYARMALKCAELQRKDRPDLKSDILPELNRLSNLGNSEASNISSDSYGPRSYDVNSHPTVSDESEVVQNIPT*	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl09g00489	696	SUPERFAMILY	Protein kinase-like (PK-like)	372	644	IPR011009	-
	Eupl09g00489	696	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	21	153	-	-
	Eupl09g00489	696	Gene3D	Phosphorylase Kinase; domain 1	358	461	-	-
	Eupl09g00489	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	507	519	IPR008271	GO:0004672\|GO:0006468
	Eupl09g00489	696	CDD	STK_N	19	165	-	-
	Eupl09g00489	696	PANTHER	OS02G0152300 PROTEIN	20	684	-	-
	Eupl09g00489	696	Coils	Coil	318	352	-	-
	Eupl09g00489	696	Gene3D	Transferase(Phosphotransferase) domain 1	462	672	-	-
	Eupl09g00489	696	SMART	serkin_6	389	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00489	696	Pfam	Universal stress protein family	22	140	IPR006016	-
	Eupl09g00489	696	MobiDBLite	consensus disorder prediction	174	222	-	-
	Eupl09g00489	696	Coils	Coil	255	275	-	-
	Eupl09g00489	696	CDD	STKc_IRAK	395	655	-	-
	Eupl09g00489	696	FunFam	Os07g0541700 protein	462	551	-	-
	Eupl09g00489	696	Pfam	Protein kinase domain	392	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00489	696	ProSiteProfiles	Protein kinase domain profile.	389	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00489	696	Gene3D	HUPs	18	159	IPR014729	-
	Eupl09g00489	696	MobiDBLite	consensus disorder prediction	659	696	-	-
	Eupl09g00489	696	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	361	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl09g00489	Eupl-Chr9	12053526	12059734	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl09g00489	100	659	Receptor kinase-like Gene Family	AT5G12000	60.131	0.0	699

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Eupl09g00489		PK_Tyr_Ser-Thr	6.8e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl09g00489	-		-	nnu:104600805	819.305