Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00488 ATGGGCAGTAGCAGCGAAGATGGATCGGCCAGGACTGGGTCCGTGGCCGTGGCCGTCCGCGGCAGCAACGGCTGTCGACGAGCCGTTCGTTGGGCAGTCCAGAATCTCATGCCCCACGCCGATCGCCTCATCCTTGTTCATGTCATGTCCCCGATCACTTCAATCCCAACTCCATCGGGGAACCATATCCCCATCAAGCAAATGGATGCCGATGTGGTTGCCATGTACAGACAGGACATGAAGCTAAAATGTGATGAAATCTTCCTCCCATTAAAGAGCCTATGCAAAACAAGTAAGATGGAGACTTTGGTGCTGGAGGATCACAATCCTGCAAATGTGCTTTTGGGATACATATCTGAATTGGGTTCTAAGAGTTTGGTATTGGGATCTTCTTCTTCAAACTGTATTTCAAGGAAACTTAAGGGACCCGATGTACCATCAACTGTTCTGAAACATTCCCCAAACACTTACAATATTTACGTCGTATCAAGACACAAGCTCATCACAAAATTGGCCAGTTCCGCGTCCACTGCTGGGACTAGTGCTGGACACAGGATGTTTACACAAACACAACATACAGAAGGTTCCAGTAGCATTGATAAACAAATATCTGCGCTTCATCCTACTCCTATGGGGTCAACGGTTAAGGAAACCTTGGAAGTGTCATCAGAGGAAGATCTTAGTGAATCACATTCTCAAGCATATACATATGGTGGTTCTTCTAGTTATGCTAATGTAGAACATCATCAGGAAAGAAACCATCAAAACTTTGGAAATAGGACCTTAGAAATTCAGACAGTCAAGGAACACATAGCTTCTTTTAAGGATGCTAAGCAGTTTGAGGTTCAGGTTGAGTTAGAACGACTGCGACTAGAACTACGGACAACTCGTGCTATGTACGATCAAGCTTGTGGAGACCTGGTCTATTTCCAGCAGAAGGTCCAGTCACTTTCTTCTGAGTGCCATGAAGAGGCAAGTAGAGTGAATGCCGCTCTGGAAAGGGAAGAAATGTTGAGAAAAATTGCTGCTGAAGAAAACGCCAAGCATTTTGACGCCATGAAGGAAGTTGAGGTGGCAAAGCAATTGCTCGCAAAAGAGGCTCATGAAAGACAGAGAGCGGAACTGAATGTCCTCAAAGAATCCTCAGAGAGGCAGAAAATAGTTGATTCTCTGTTCTTAAGTGACAGAAGGTACAGAAGGTACACCAGGTATGAAATAGAGTTTGCTTCTGATTTTTTCTCCGAGGCCAAGAAGATTGGTGAAGGAGGATATGGGAAAGTGTACAAATGTAGTCTCGATCATACCCCAGTGGCCGTGAAGGTCCTTCAGTCAGATGCATCTGACAAGAAAGAGGAATTTCTGAGAGAGGTTGAAGTTCTTAGCCAACTCCATCATCCTCACGTGGTTTTACTGCTCGGAGCCTGTCCTGAGACCGGATGTCTAGTGTACGAGTACATGGAAAACGGGAGCCTTGAGGAACGTATTTTCTGCAGCGAGGACACACCACCTCTTCCATGGTTTGTTCGGTTCCGAATTGTCTATGAAGTAGCTTGTGGTCTTGCATTCTTACACAGCTCAGAGCCAGAACCGATTGTTCATCGGGATCTGAAACCAGGGAATATCTTGTTAGACAGAAATTACGTGAGCAAGATTGGAGATGTTGGGCTGGCTAAACTTATGTCAGATGTTGTGCCTGACAACGTCACGGAGTACAGAGACACCATTCTTGCGGGTACACTCTGTTACATGGACCCCGAGTATCAGCGAACTGGTACCCTCAGACCCAAATCAGACATATATGCATTTGGAGTAATCATCCTCCAGTTGTTGACGGCTCGCCTTCCAAATGGGCTGTTAATGACTGTTGAAAATGCCATTAACAGTTGTTCCTTTGCTAACATACTAGACAAGTCAATTCCAGATTGGCCACTTGCTGAATCAGAGGAATTAGCAAGGATTGCACTGAAATGTTCCAGATTAAGATGCAGAGATAGGCCTGATCTTGAATCTGAAGTCCTGCCGGTGCTCAAAAAGCTTTCGGATATGGCAAATGCTAGTCTTCAGCTACAAGAGGGCAGTGTTTATGCACGGAGCCACTACTTCTGCCCCATCCTTCAGGTGCTAGTCCAAACTCTGGAAGATGGTTTCTTCGTGCTAAGGTTCTTTAGTGGACATGCATCTCTTATTCTGTTTATCTGTTCATTCTTTTGGGTAATGCAGGAGGTAATGGATGATCCATACATTGCGGCTGATGGATTTACCTACGAGTACATGGCGATCAAGGCATGGCTTGAGAAACAAAGCATGTCTCCCGTAACAAGGCTTAAGCTCCCACATACCAGGCTAACACCGAACCACACACTACGTTCCGCCATACAAGAGTGGAAGGCAAGTATACAATTCTTAAGTTCGCCATATTGA 2421 0.4552 MGSSSEDGSARTGSVAVAVRGSNGCRRAVRWAVQNLMPHADRLILVHVMSPITSIPTPSGNHIPIKQMDADVVAMYRQDMKLKCDEIFLPLKSLCKTSKMETLVLEDHNPANVLLGYISELGSKSLVLGSSSSNCISRKLKGPDVPSTVLKHSPNTYNIYVVSRHKLITKLASSASTAGTSAGHRMFTQTQHTEGSSSIDKQISALHPTPMGSTVKETLEVSSEEDLSESHSQAYTYGGSSSYANVEHHQERNHQNFGNRTLEIQTVKEHIASFKDAKQFEVQVELERLRLELRTTRAMYDQACGDLVYFQQKVQSLSSECHEEASRVNAALEREEMLRKIAAEENAKHFDAMKEVEVAKQLLAKEAHERQRAELNVLKESSERQKIVDSLFLSDRRYRRYTRYEIEFASDFFSEAKKIGEGGYGKVYKCSLDHTPVAVKVLQSDASDKKEEFLREVEVLSQLHHPHVVLLLGACPETGCLVYEYMENGSLEERIFCSEDTPPLPWFVRFRIVYEVACGLAFLHSSEPEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLMSDVVPDNVTEYRDTILAGTLCYMDPEYQRTGTLRPKSDIYAFGVIILQLLTARLPNGLLMTVENAINSCSFANILDKSIPDWPLAESEELARIALKCSRLRCRDRPDLESEVLPVLKKLSDMANASLQLQEGSVYARSHYFCPILQVLVQTLEDGFFVLRFFSGHASLILFICSFFWVMQEVMDDPYIAADGFTYEYMAIKAWLEKQSMSPVTRLKLPHTRLTPNHTLRSAIQEWKASIQFLSSPY* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00488 806 SMART serkin_6 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl09g00488 806 Pfam U-box domain 738 797 IPR003613 GO:0004842|GO:0016567
Eupl09g00488 806 Gene3D HUPs 13 156 IPR014729 -
Eupl09g00488 806 SUPERFAMILY RING/U-box 738 798 - -
Eupl09g00488 806 CDD STKc_IRAK 419 679 - -
Eupl09g00488 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 800 IPR013083 -
Eupl09g00488 806 Gene3D Transferase(Phosphotransferase) domain 1 486 698 - -
Eupl09g00488 806 Pfam Universal stress protein family 15 154 IPR006016 -
Eupl09g00488 806 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 386 485 - -
Eupl09g00488 806 SUPERFAMILY Protein kinase-like (PK-like) 395 669 IPR011009 -
Eupl09g00488 806 Coils Coil 356 385 - -
Eupl09g00488 806 SMART Ubox_2 730 795 IPR003613 GO:0004842|GO:0016567
Eupl09g00488 806 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 153 - -
Eupl09g00488 806 ProSiteProfiles U-box domain profile. 739 802 IPR003613 GO:0004842|GO:0016567
Eupl09g00488 806 CDD STK_N 14 165 - -
Eupl09g00488 806 CDD RING-Ubox_WDSUB1-like 740 785 - -
Eupl09g00488 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Eupl09g00488 806 PANTHER OS02G0152300 PROTEIN 15 794 - -
Eupl09g00488 806 Gene3D Phosphorylase Kinase; domain 1 393 485 - -
Eupl09g00488 806 Pfam Protein tyrosine and serine/threonine kinase 416 669 IPR001245 GO:0004672|GO:0006468
Eupl09g00488 806 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Eupl09g00488 806 ProSiteProfiles Protein kinase domain profile. 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00488 Eupl-Chr9 12047973 12054492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00488 8 797 Plant U-box Gene Family AT5G57035 52.684 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Eupl09g00488 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00488 - - ming:122083592 940.258