Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00447 ATGGATGTTGCAGAAGAGAAGCGAAACGGAGGTGATTTCATCGCCGATAATGGCGAAGAAGAGGTTGAGGAAGGAATTGAAGAAAAACCATCCTCAGATCATGGGATTGATAACGTAGATAGTGCAGGCGATGATATAAAGCATTCCGTCGGTCGTGATTCCTCCTCAGGAAAAATCTTTGTTGGAGGCGTTTCTTGGGACACGACTGAAGAGACCTTCACTAAGCATTTTGAGAAGTATGGGGAAATCATTGATTCTGTAATCATGAAGGAGAAACATACTAGACGGCCACGGGGGTTTGGATTTGTAACATTTGCCGATCCATCTGTTGTGGACAAGGTTTTGGAGGACGAACATGTTATCAAGAGCAGAACAGTGGAAGTAAAGAGAACAGTCCCGAGGGATGAAACGCAGGTTAAAGGGGGCATGAAAACAAAGAAAATCTTTGTGGGTGGGATACCCCCATCTTTCACTGAAGACGAGTTGGGGGAGTACTTTTCTTCTTATGGTAACATTGTCGAGCACCAGATAATGTTGGACCGAAATTCCGGACGATCACGTGGTTTCGGGTTTGTCACCTTTGAGAGTGATAAGACTGTTGAAGAGATCATCTCCGAGGGTAAAACACATGAGCTCGGAGGTAAACAGGTGGAAATCAAGAAGGCTGAACCGAGAAGAGGTGGTGGAGATCAAGGAAGTGATGCCAGGGATCGTTACAATGGTGGTTTTTCAAACGCGTATGGGAGCTTCAGCGGTGGTGCATTTGGGTATGGCAGTGGTTATAGATCTGGAGGGGGGTATGGTGGAAGATCGATGGGAGGATATGGTGGGTATGGTCAAGGCTATGGTGCAGCCGCCACTGATGTTTATGGTGGTGGGTATGGTGGATATGGTCATGGTGTTGGGGCTGGTTATGGTGGGTCCATGTATGGGAGTGCTGGATTTTGGGGTGATGGGTATGGTAGCGCAGGCGGTTATGGGGATGGCTATGGTGGTGGTGCTGGCAGTTATGGTGGGAATAGAGGATATGTGAATGGTGGTGCCACCACCGAGAGGTATCATCCGTATGGAAGGTGA 1077 0.4791 MDVAEEKRNGGDFIADNGEEEVEEGIEEKPSSDHGIDNVDSAGDDIKHSVGRDSSSGKIFVGGVSWDTTEETFTKHFEKYGEIIDSVIMKEKHTRRPRGFGFVTFADPSVVDKVLEDEHVIKSRTVEVKRTVPRDETQVKGGMKTKKIFVGGIPPSFTEDELGEYFSSYGNIVEHQIMLDRNSGRSRGFGFVTFESDKTVEEIISEGKTHELGGKQVEIKKAEPRRGGGDQGSDARDRYNGGFSNAYGSFSGGAFGYGSGYRSGGGYGGRSMGGYGGYGQGYGAAATDVYGGGYGGYGHGVGAGYGGSMYGSAGFWGDGYGSAGGYGDGYGGGAGSYGGNRGYVNGGATTERYHPYGR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00447 358 Gene3D - 55 138 IPR012677 -
Eupl09g00447 358 MobiDBLite consensus disorder prediction 1 15 - -
Eupl09g00447 358 SMART rrm1_1 58 129 IPR000504 GO:0003723
Eupl09g00447 358 SMART rrm1_1 147 220 IPR000504 GO:0003723
Eupl09g00447 358 MobiDBLite consensus disorder prediction 27 52 - -
Eupl09g00447 358 SUPERFAMILY RNA-binding domain, RBD 53 141 IPR035979 GO:0003676
Eupl09g00447 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Eupl09g00447 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 217 IPR000504 GO:0003723
Eupl09g00447 358 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 358 - -
Eupl09g00447 358 FunFam Heterogeneous nuclear ribonucleoprotein 1 56 138 - -
Eupl09g00447 358 Gene3D - 139 249 IPR012677 -
Eupl09g00447 358 MobiDBLite consensus disorder prediction 1 55 - -
Eupl09g00447 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 133 IPR000504 GO:0003723
Eupl09g00447 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
Eupl09g00447 358 SUPERFAMILY RNA-binding domain, RBD 144 253 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00447 Eupl-Chr9 11264332 11277372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00447 57 247 Eukaryotic Initiation Factors Gene Family AT3G16380 25.126 7.51e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00447 K12741 - ming:122070716 341.273