Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00411 ATGAGTCGCTACGATAGCCGGTCTGGCGACCCTGGCTCTTACCGTGACCGAAGAAGTGATTCGGGTTTTGGTGGTGGATACGAAGGAATCGGCCGGTCTTCGTCAAGTAAGAGGGAATTCGACGGCACTGGCTCGCCCAAGAAGCAGGACTTGGATGGGCTGACCCACTTCGAGAAGAATTTCTATGTCGAGTCGGCTGCTGTGGCGGCGATGACCGAGACCGAAGTCGAGGCGTACCGTCTCCGGAGACAGATTACCGTTGAGGGCAAAGACGTACCCAGGCCGGTCACCGATTTTCGTGACATCGGGTTCCCGGATTATGTGATGCAAGAAGTTCTGAAAGCTGGCTTTGTTGAACCCACCCCTATTCAAGCCCAAGGATGGCCAATGGCTTTAAAGGGTCGTGATCTCATCGGAATTGCTGAAACTGGGTCAGGAAAGACACTTGCCTATCTACTGCCTGCCATTGTCCATGTTAATGCTCAGCCATTTTTAGCTCCTGGAGATGGCCCAATTGTCTTAGTTTTAGCCCCAACCCGTGAACTTGCTGTTCAAATACAACAGGAAGCTGCTAAGTTTGGGGCCTCATCAAGGATCAAGAATACCTGTATATATGGTGGGGTTCCAAAGGGACCTCAAGTTCGTGATCTTCAGAAAGGTGTTGAAATTGTTATCGCTACACCTGGAAGGCTGATTGATATGATAGAGTCCCATCATACAAACTTGCGAAGGGTTACCTATCTTGTTTTAGATGAGGCAGATCGGATGTTAGACATGGGTTTTGAACCTCAGATTAGGAAAATCGTTTCTCAGATTCGCCCAGACCGTCAAACCCTGTATTGGAGTGCTACTTGGCCCAAGGAGGTTGAACAACTTGCAAGGCAGTTCCTCTACAACGCATACAAGGTGGTCATTGGTTCCATAGACTTGAAAGCTAACCATGCGATTCGCCAGCATGTGGAGATTGTTTCGGAGAATCAGAAATATAACAAATTGGTGAAGCTACTGGAGGATATTATGGATGGTAGCCGGATTCTGATATTCATGGACACCAAGAAAGGATGTGACCAGATCACTAGGCAGCTTCGCATGGATGGTTGGCCCGCCCTCTCAATCCATGGAGACAAGAGTCAAGCAGAGAGGGATTGGGTCCTCTCAGAGTTCAAGGCTGGCAAGAGTCCAATAATGACCGCAACAGATGTTGCAGCACGTGGTTTAGATGTGAAGGATGTGAAATATGTGATCAACTATGATTTCCCGGGATCTCTAGAGGATTATGTCCACCGCATCGGTCGAACAGGCAGGGCTGGGGCCAAAGGAACTGCATATACTTTCTTCACGGCTGCAAATGCCAGATTTGCAAAGGAACTTATTAGTATCCTTGAGGAAGCTGGACAGAAGGTCAGTCCTGAACTGGCGGCAATGGGACGTGGTGCACCTCCTCCCCCATCAGGTCATGGGGGCTTCCGCGATCGTGGGAGGGGATTTGGTGGTGGTCGCTCATGGAGTTAA 1512 0.496 MSRYDSRSGDPGSYRDRRSDSGFGGGYEGIGRSSSSKREFDGTGSPKKQDLDGLTHFEKNFYVESAAVAAMTETEVEAYRLRRQITVEGKDVPRPVTDFRDIGFPDYVMQEVLKAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNAYKVVIGSIDLKANHAIRQHVEIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQKVSPELAAMGRGAPPPPSGHGGFRDRGRGFGGGRSWS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00411 503 CDD SF2_C_DEAD 316 446 - -
Eupl09g00411 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 249 257 IPR000629 -
Eupl09g00411 503 MobiDBLite consensus disorder prediction 1 52 - -
Eupl09g00411 503 MobiDBLite consensus disorder prediction 1 17 - -
Eupl09g00411 503 SMART helicmild6 356 437 IPR001650 -
Eupl09g00411 503 Gene3D - 60 302 IPR027417 -
Eupl09g00411 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Eupl09g00411 503 MobiDBLite consensus disorder prediction 475 503 - -
Eupl09g00411 503 FunFam probable ATP-dependent RNA helicase DDX17 59 306 - -
Eupl09g00411 503 Pfam DEAD/DEAH box helicase 121 292 IPR011545 GO:0003676|GO:0005524
Eupl09g00411 503 SMART ultradead3 116 319 IPR014001 -
Eupl09g00411 503 Pfam Helicase conserved C-terminal domain 328 437 IPR001650 -
Eupl09g00411 503 FunFam ATP-dependent RNA helicase RhlB 307 479 - -
Eupl09g00411 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 476 IPR001650 -
Eupl09g00411 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 453 IPR027417 -
Eupl09g00411 503 Gene3D - 303 477 IPR027417 -
Eupl09g00411 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 303 IPR014001 -
Eupl09g00411 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 475 - -
Eupl09g00411 503 CDD DEADc_DDX5_DDX17 108 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00411 Eupl-Chr9 10741386 10759709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00411 84 457 Eukaryotic Initiation Factors Gene Family AT3G19760 34.309 1.26e-73 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00411 K12823 - ming:122089291 869.766