Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00398 ATGGATGGCATAGAGAGCTTTGTGGATCATGTTACAGAATCTGCATTAGCTCCTGAGGAAGTAGTAGTAGAAGAAGAAGAAGTTAACGATGATGACGATCCGAAAGGACCATTGATGAATTGTAAGAACTTGGTATCAGAGAGAAACAGGAGGAAGAGACTTAGTCAACAGTTGCTTGCTCTCCGAGCTCTTGTTCCCAACATCACCAAGATGGACAAGAGATCAATTCTAATGGATGCCTTGGATTATCTTAGGAGTATACATGAAGAAATTGCATGGCTTGAGAAAGGCCCATCGAAAATTCACAGATAA 312 0.4103 MDGIESFVDHVTESALAPEEVVVEEEEVNDDDDPKGPLMNCKNLVSERNRRKRLSQQLLALRALVPNITKMDKRSILMDALDYLRSIHEEIAWLEKGPSKIHR* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00398 103 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 97 IPR036638 GO:0046983
Eupl09g00398 103 SMART finulus 44 93 IPR011598 GO:0046983
Eupl09g00398 103 Gene3D - 40 99 IPR036638 GO:0046983
Eupl09g00398 103 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 31 94 - -
Eupl09g00398 103 MobiDBLite consensus disorder prediction 22 41 - -
Eupl09g00398 103 Pfam Helix-loop-helix DNA-binding domain 46 86 IPR011598 GO:0046983
Eupl09g00398 103 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00398 Eupl-Chr9 10584238 10585425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00398 30 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 52.381 2.19e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl09g00398 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00398 - - nnu:104592121 104.375