Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00374 ATGGAATACCCACCAATAACATTACTTGATCCGAATAACATTACTGTCGTTTATCTTGGAAAAGCTGACAATATTAGGCCAAGACTTCAGGAATACGGCCGAACAGGTTCTCATTTGGACCATGGCATCTTAATTTGTCATCCAAATGAAAATAAGAGCGCTTATTGTTTCCCAACAGGACCTGGATTTTTTAAGGAGGCATTCTCGAAGGGCTATTCTATCGTGTTTAGATGGGCTCCGACGAAAAGCAAGAAGGATGCTGAGAAAAAAGAAGCACAGCTGCTTGATACATTCGATTATGCATGGAACAAAGGTAGGAATGGCACTCGTCGCCCTGATGATATTTACTCTAAACTCAGTATGAAAACAACTTCAAGCAGCAGCTTGTGTCTCAATACTGCTAGAAAGCCCCAACAATGGAATTGGGTCGACCCCTCTTTTGGTCTGGGGAGAGAGGGGTTCAGGATCAAAATAAGCACACCACTATCAAAAGAGACTAATTACTGGGAGAGTACTGATGATCTCTGTACTCGAATTGTCAAATATGGTGTACCACAGCCTCGATCGGTCTCTTTCAAATGTGATGGCGTTAATGACGACTATACTACTATTTGTGGAGTGAACTTAGGTGATGGGTCTCTTTGTAGAAGAAGACCAATTGAAGGAAGAAAAAGGTGTGAGGGGCATAAAGGGAAGAAGATTACCAATCTAAGGGACCCCCCTTTTGGTCAGGAGCAAGTGGGGTTCGGGATCAAAACAAGCACACCACTATCAAAAGAGACTAATTACTGGGAGAGTACTGATGATCTCTGTACTCGAATTGTCAAATATGGTGTACCACAGCCTCGATCGGTCTCTTTCAAATGTGATGGCGTTAATGACGACTATACTACTATTTGTGGAGTGAACTTAGGTGATGGGTCTCTTTGTAGAAGAAGACCAATTGAAGGAAGAAAAAGGTGTGAGGGGCATAAAGGGAAGAAGATTGCCAATCTAAGGGACCCCCCTTTTGGTCAGGAGCAAGTGGGGTTCGGGATCAAAACAAGCACACCACTATCAAAAGAGACTAATTACTGGGAGAATACTGATGATCTCTGTACTCGAATTGTCAAATATGGTGTACCACAGCCTCGATCGGTCTCTTTCAAATGTGATGGCGTTAATGACGACTATACTACTATTTGTGGAGTGAACTTAGGTGATGGGTCTGTTTGTAGAAGAAGACCAACTGAAGGAAGAAAAAGGTGTGAGGAACATAAAGGGAAGAGGATTACTGAGTCCATTTCTACATCAATAACAGAATGGAAATCACATGAAGGGAATTCACATGTATGTGGTGTGGACTTAGGATATGGGTGTGTGTGTATGAACGTCCCAGTTCAAGGAAGGAAGAGGTGTGAATTACATAAAGGAAGAAGGGTCACCACTGAACAAATTATACCTGAGAGAATATCACAGTCAGATGTGTGTGGTGTGGACTTAGAATATGGGTCTGTTTGTATGAATCTTCCAGTGCAAGGGAGGAAGAGGTGTGAACTACATAAAGGAAGGAGAGTCATCACTCAAGACTATATCCCTGAGAGAACATCACTTGTGTGTGGTGTGGGCTTACAAAATGGATCTGTTTGTATGAGAGCCCCCAGTGAGTGGAAGGGTGAGGTGTGCAATACATAA 1674 0.4271 MEYPPITLLDPNNITVVYLGKADNIRPRLQEYGRTGSHLDHGILICHPNENKSAYCFPTGPGFFKEAFSKGYSIVFRWAPTKSKKDAEKKEAQLLDTFDYAWNKGRNGTRRPDDIYSKLSMKTTSSSSLCLNTARKPQQWNWVDPSFGLGREGFRIKISTPLSKETNYWESTDDLCTRIVKYGVPQPRSVSFKCDGVNDDYTTICGVNLGDGSLCRRRPIEGRKRCEGHKGKKITNLRDPPFGQEQVGFGIKTSTPLSKETNYWESTDDLCTRIVKYGVPQPRSVSFKCDGVNDDYTTICGVNLGDGSLCRRRPIEGRKRCEGHKGKKIANLRDPPFGQEQVGFGIKTSTPLSKETNYWENTDDLCTRIVKYGVPQPRSVSFKCDGVNDDYTTICGVNLGDGSVCRRRPTEGRKRCEEHKGKRITESISTSITEWKSHEGNSHVCGVDLGYGCVCMNVPVQGRKRCELHKGRRVTTEQIIPERISQSDVCGVDLEYGSVCMNLPVQGRKRCELHKGRRVITQDYIPERTSLVCGVGLQNGSVCMRAPSEWKGEVCNT* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00374 557 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 336 439 IPR038909 GO:0003677|GO:0006355
Eupl09g00374 557 Pfam GIY-YIG domain-containing protein 8 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00374 Eupl-Chr9 10090652 10093482 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00374 336 547 HRT Transcription Factor Family AT5G56780 32.558 1.03e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Eupl09g00374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00374 - - psom:113348020 341.658