LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl09g00285	ATGGTACTCCCTTTTCAGGGACCTGTGGTTCCCCAATACCTACGCACAGCTACTGTATCCACCATAAAGCCCTTGACTGGATACCAATATCGCTTTGCAATTTATAAAACGAGTGATTCAACCCTTCCACCCATCCTCAATGCAGTTGAGATTTATACAGTCAAACAGTTCTCGCAATCACCAACAAACAGTGAAGATGTTGATGCGATTACAAACATCAAATCAACGTATCGGGTACAGAGAGAATGGGTAGGTGATCCATGTCTGCCAAGGAATTACTCCTGGGACGGCCTGATGTGCAGCTACAATGGTTCAAATCCTCCCACTATCATTTCACTAAACTTGACCTCAAACGGTTTGACTGGGGAAATAGCAGCTTCTCTGAGCAACCTCACATCAATTGAGTCCTTGGATTTGTCAAGCAATAGCTTAACTGGACCAGTGCCTGAGTTTCTATCAAAACTACCCTCCCTAAGGTTCCTGTCTATAAAAGGCAACGATCTTACAGGTTCTGTTCCTACGGAACTTATAGAAAGAGAAAAGGATGGATCACTAACATTGAGTGTGGACGATCGAAATATTTGTGCCTTGGATTCATGCAAAGAGGAAAACAAGAACAAAAACATTATCATTCCAGTAGTTGCATCAGTTGCTTCGGCAATGGTGCTATCAATCGTATTGATTATTTTGTGGAGACTAAAAAGGAGAAGACAACCAGCTGTAAATCTGTTTTCCAACTCCAACAAAGAAGGCAGCTCCTTCGCATCAAATAACAGACAGTTCACCTATGTTGATATTGTGAGTATTACCAATGATTTCCAAAAAGTTATCGGCAAAGGAGGATTTGGAACTGTTTACCATGGATACTTGAAAAATGGCACTGAAGTTGCTGTAAAGATGCTCTCTCAATCATCGTCTCAAGGGTCTAAGGCATTCCAGACCGAGGCTGAACTCTTAATGAGAGTTCATCATAGGAACTTGGCCTCTTTTGTTGGGTATTGTGATGAAGGTAGCAACAAGGCACTCATTTATGAGTACATGGCTAATGGGGACCTAAAACATCATCTTATGGAAAGAAGTGCAAATGCCTTAAGTTGGGAAAGGAGACTTCAAATAGCAATAGACACAGCACAAGGACTGGAATACTTACATAATGGTTGTAAGCCACCTATAATTCATAGAGATGTGAAGTCAGATAATATCCTTTTAAGCGAAAGGTTGGAGGCTAAAATGGCAGATTTTGGAGTTTCAAAGGTTTATCCTAGTGATGGTCTCACTCATGTATCAACTGCAGTCATGGGCACACCAGGGTATCTTGACCCAGAGTACTACATTTCTGATAAGTTGAATGAGAAAAGTGATGTTTATAGTTTTGGGATTGTTCTCTTAGAGCTAATTACAGGGCAACCTGCAATCATACAAATCTCTGAGAGGATTCACATAGTTCAATGGGTGAGTCCCATGCTTGCAAGAGGGGAAATAAGAAGTATTGTTGATCCAAGGTTACAAGGAGATTTTGACATAAATTCTCTTTGGAAAGTTATAGAGATAGCAATATCATGCACAGCATCTACCTCCATCCAAAGGCCAACCATGAGTCAGGTATTGTCTGAATTAAAAGAGTGTTTGTCAACAGAGGAACCTTGTGAAAAAACATCAATCTCCGAAGACGCTAATTCAAAATCAAGCAATTCCATTGAAATGATTCATGTTGATCATGAATCCATGGTCGGCCCTCCAGCAAGGTAG	1749	0.4077	MVLPFQGPVVPQYLRTATVSTIKPLTGYQYRFAIYKTSDSTLPPILNAVEIYTVKQFSQSPTNSEDVDAITNIKSTYRVQREWVGDPCLPRNYSWDGLMCSYNGSNPPTIISLNLTSNGLTGEIAASLSNLTSIESLDLSSNSLTGPVPEFLSKLPSLRFLSIKGNDLTGSVPTELIEREKDGSLTLSVDDRNICALDSCKEENKNKNIIIPVVASVASAMVLSIVLIILWRLKRRRQPAVNLFSNSNKEGSSFASNNRQFTYVDIVSITNDFQKVIGKGGFGTVYHGYLKNGTEVAVKMLSQSSSQGSKAFQTEAELLMRVHHRNLASFVGYCDEGSNKALIYEYMANGDLKHHLMERSANALSWERRLQIAIDTAQGLEYLHNGCKPPIIHRDVKSDNILLSERLEAKMADFGVSKVYPSDGLTHVSTAVMGTPGYLDPEYYISDKLNEKSDVYSFGIVLLELITGQPAIIQISERIHIVQWVSPMLARGEIRSIVDPRLQGDFDINSLWKVIEIAISCTASTSIQRPTMSQVLSELKECLSTEEPCEKTSISEDANSKSSNSIEMIHVDHESMVGPPAR*	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl09g00285	582	SMART	serkin_6	271	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00285	582	FunFam	Leucine-rich repeat receptor-like protein kinase	247	346	-	-
	Eupl09g00285	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Eupl09g00285	582	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	347	552	-	-
	Eupl09g00285	582	Pfam	Protein tyrosine and serine/threonine kinase	273	539	IPR001245	GO:0004672\|GO:0006468
	Eupl09g00285	582	Pfam	Malectin-like domain	7	54	IPR024788	-
	Eupl09g00285	582	FunFam	Leucine-rich repeat receptor-like kinase	65	195	-	-
	Eupl09g00285	582	SUPERFAMILY	L domain-like	68	176	-	-
	Eupl09g00285	582	Gene3D	Transferase(Phosphotransferase) domain 1	347	567	-	-
	Eupl09g00285	582	ProSiteProfiles	Protein kinase domain profile.	271	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl09g00285	582	ProSitePatterns	Protein kinases ATP-binding region signature.	277	299	IPR017441	GO:0005524
	Eupl09g00285	582	Coils	Coil	581	582	-	-
	Eupl09g00285	582	Gene3D	Ribonuclease Inhibitor	67	187	IPR032675	-
	Eupl09g00285	582	CDD	STKc_IRAK	277	541	-	-
	Eupl09g00285	582	PANTHER	OS07G0107800 PROTEIN-RELATED	11	546	-	-
	Eupl09g00285	582	SUPERFAMILY	Protein kinase-like (PK-like)	252	539	IPR011009	-
	Eupl09g00285	582	MobiDBLite	consensus disorder prediction	548	582	-	-
	Eupl09g00285	582	Pfam	Leucine rich repeat	112	168	IPR001611	GO:0005515
	Eupl09g00285	582	Gene3D	Phosphorylase Kinase; domain 1	243	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl09g00285	Eupl-Chr9	8597522	8602764	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl09g00285	7	582	Receptor kinase-like Gene Family	AT1G51800	48.322	0.0	575

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Eupl09g00285		PK_Tyr_Ser-Thr	3.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl09g00285	-		-	nnu:104588225	798.505