Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00278 ATGATGATGATCGGAGAAGGAAACCTAAATCCGGCCGTTCATGTCCCTCCTTGGACTCTATTTGATGATTCGACGGCTGGGATGGTCTTTCCCCTCCCTGTTAGTGGTGTTTCCTCTAACGCCAACTGCAATGTTAACGTTGGAGGAGGAGAATATTCTCCATTTCTATCAGGGGACGCCTTAACGGCGCTGCAGCGTTACCTTCCGTCTAACGACATAGATGCCGATTCGGATATATCTTGTCGCGAGTCCGATATACCGGTCGACGCATATTCCTGTGACGAGTTCCGCATGTACGATTTTAAAGTGCGCCGGTGCGCACGGGGCCGGTCTCACGACTGGACTGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGACGGAGGGACCCACGTAAGTTTCACTACTCTGGTACTGCCTGCCCTGACTTTCGCAAAGGGAACTGTAAGAGGGGCGATTCTTGTGAGTACGCTCACGGCGTATTTGAGTGCTGGCTCCATCCTGCGCGTTATCGTACGCAGCCGTGTAAGGACGGGACTAGTTGTCGCCGAAGAGTTTGCTTCTTTGCGCACACGCCTGAGCAGCTCCGAGTTTTGCCTCAGCAGGGTCAGAAATCGGCCTTGGCAACCGAGTCGCCACCATCGTACGACGGGTCGCCACTTCGACACGCTCTTGACTCGTATATTTCCAAGGGATCGGCTATGTTGTCTTCTCCGACGTCGACCCTTATATCTCCACCTATGTCTCCGTCGTCTGACTCGCCACCCATGTCGCCTAACAGCCCGTCTCTGACTCGTCCTCTGGTGGGTTCAAACTCGATCAACGAAATGGTGGCATCTCTGCGTCATTTGCAGCTTAATAAGGTGAAATCGGTACCCTCTTCCTGGGGTATTCAGATGGGTTCTGGGTTTTGTTCTCCGAGGGGTGGCTCAACCCTTCGACCGGGTTTCAATAGCCTACCTTCAACCCCAACTCGGACCCCAACTCAGTCCGGTATGGGGCAGTTGGATTTCTGGGACAGAGTTTCCTCTGTCGAAGAGGAACCTGCAATGGAGAGGGTTGAATCTGGGAGGGTACTGCGTGCTAAAATATTTGCAAAACTGAGCAAGGAGAACTCGCTGGAGCGAGTTGACTCACCCACACCTGCTCCAGACGTTGGGTGGGTTTCAGAGTTGGTGAAGTGA 1185 0.5367 MMMIGEGNLNPAVHVPPWTLFDDSTAGMVFPLPVSGVSSNANCNVNVGGGEYSPFLSGDALTALQRYLPSNDIDADSDISCRESDIPVDAYSCDEFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKRGDSCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQGQKSALATESPPSYDGSPLRHALDSYISKGSAMLSSPTSTLISPPMSPSSDSPPMSPNSPSLTRPLVGSNSINEMVASLRHLQLNKVKSVPSSWGIQMGSGFCSPRGGSTLRPGFNSLPSTPTRTPTQSGMGQLDFWDRVSSVEEEPAMERVESGRVLRAKIFAKLSKENSLERVDSPTPAPDVGWVSELVK* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00278 394 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Eupl09g00278 394 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Eupl09g00278 394 MobiDBLite consensus disorder prediction 199 223 - -
Eupl09g00278 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Eupl09g00278 394 MobiDBLite consensus disorder prediction 199 213 - -
Eupl09g00278 394 PANTHER UNKEMPT FAMILY MEMBER 53 394 IPR045234 -
Eupl09g00278 394 MobiDBLite consensus disorder prediction 236 265 - -
Eupl09g00278 394 Gene3D - 135 199 - -
Eupl09g00278 394 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Eupl09g00278 394 SMART c3hfinal6 135 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00278 Eupl-Chr9 8482721 8485785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00278 85 199 C2H2 Transcription Factor Family AT5G12850 72.174 1.27e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl09g00278 zf-CCCH 1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00278 - - nnu:104588228 613.609