Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00272 ATGAGAAGCTTTCTTTCATCAACAATGGCGGTGGTGGCTCCGCCGCCTCCTCTTCCAATTCAGGACGCTTCACTTTACGTCGGTGATCTAGACCCGCATGTATCAGAATCGGAGCTCTTAGAAGCTTTCTCCGGTGTCTCTGGTCCTATCGCCTCTGTTCGCCTCTGCAGAGATTCTATCTCCGGCCAATCCCTTCGATACGCTTACGTCAACTACTACTCCAGCTCTGAAGCGTCCAAAGCTATGGATTTTCTAAACCACACCTGTTTGAATGGGAAGCCAATGCGGATCATGCGGTCGAAGAGAGACCCTTTACTAAGAAAGACTGGCATCGCCAATCTCTTTGTCAAAAATCTCGACCTGGCTCTTAATAGTGCAGGGTTGCAGGACATATTCAGCAAGTTCGGAACTCTTCTTTCTTGCAAGGTGCCTGAGGAAAATGGGAAGAGTAAGGGATTTGGGTTTGCGCAGTTTGTTTCGGAGGAATCTGCTGTGGCTGCCATCAAGGCTCTCCATGGTACTCTGCTTCATGGGAAGGAACTATATGTGTCTAAGTTCGTCAAGAAGTATGAGAGGCAAACGGTATGCAAAGAACCCAAATTCACTAATCTATATGTGAAGAATCTGGATCGAGATTTGACTGAAAATCTCCTTCGAGATAAGTTCTCTGATTTTGGGAAGGTAAGCAATGTTGCTATCATTAAGGATGGTCAAGGGAAATCAAAGGGCTTTGGGTTCATCAACTTTGAGTCGCCAGAAGATGCTAAGAAGGCTGTGGAGTTCATGAATGATGCACAACTAGGATCGAAAAAGATCTTTGCAGGAAGGGCTCAGAAGAAGGCCGAACGGGAGCAGCTCTTAAGGCACCAATACAAGGAGATACATGATGAACATATTCAGAAGTTGAAAGATTCAAATGTGTATGTGAAGAATCTTGATGTGTCAATTGACGATAACATATTACGGGAACATTTCAACACCTGTGGACAAATAACTTCAGCGAAAGTCATGCGCTATGATAACGGGATAAGTAAAGGATTTGGTTTTGTATGCTTCTCCACTCCTGATGAAGCAAAGAAGGCTGTGACTATACATCACGGAACCACGTTCCAAGAGAGATGTCTGTATGTGGCTATAGCCCAACGCAAGCAAGATCGCCATGCTAAATTGCAGCTTCGATATGCCCAACATACACTTAGATCTCTGCCCTCTTCTGTCCCTGAGCTGGTTGTACCCCAAGGATTCCAGTCGTCCCATTACTATTTGCCTCCATCACACATCAATCCATGTCAATCGGTTTTGTATCATCATGCTGATATGAATAGTGGTATACTACCTCCTGAAATACAGGGTTACCGAACAATGTTTCCCCCGGTGATTTCAAGGGAGCAAACACAGCAGGGGCGGACAAACGAATGGGTAAATGAGCTCCCACTTGTTCATGCTCCATATGTTCCTTACTTCCATCGTGGTGTTCCTCCCCTAAATGTACTGCAAGGGTTTGAGCAACAGAATTCCACAAAATACTCTACTGCTAGCAATCTTTACAGACAGCTAGGCAGTGGGGCTCTTGACAATCAGAAATTACGCTTCTCCAATAAAATGGGGAACATGAGAAGTGGCACTGGAGATTCTTCCTCTCAAGGATCAGGGGTAAATAGAAATCTTATTGCAGCGACAGCTCCTGGGAACTGCAAGCAGCTCATTGGGAATTCTCTTCATCCTCTTGTTCAGAAACTTCAGCTCTGA 1749 0.4517 MRSFLSSTMAVVAPPPPLPIQDASLYVGDLDPHVSESELLEAFSGVSGPIASVRLCRDSISGQSLRYAYVNYYSSSEASKAMDFLNHTCLNGKPMRIMRSKRDPLLRKTGIANLFVKNLDLALNSAGLQDIFSKFGTLLSCKVPEENGKSKGFGFAQFVSEESAVAAIKALHGTLLHGKELYVSKFVKKYERQTVCKEPKFTNLYVKNLDRDLTENLLRDKFSDFGKVSNVAIIKDGQGKSKGFGFINFESPEDAKKAVEFMNDAQLGSKKIFAGRAQKKAEREQLLRHQYKEIHDEHIQKLKDSNVYVKNLDVSIDDNILREHFNTCGQITSAKVMRYDNGISKGFGFVCFSTPDEAKKAVTIHHGTTFQERCLYVAIAQRKQDRHAKLQLRYAQHTLRSLPSSVPELVVPQGFQSSHYYLPPSHINPCQSVLYHHADMNSGILPPEIQGYRTMFPPVISREQTQQGRTNEWVNELPLVHAPYVPYFHRGVPPLNVLQGFEQQNSTKYSTASNLYRQLGSGALDNQKLRFSNKMGNMRSGTGDSSSQGSGVNRNLIAATAPGNCKQLIGNSLHPLVQKLQL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00272 582 Gene3D - 104 192 IPR012677 -
Eupl09g00272 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Eupl09g00272 582 PANTHER OS02G0815200 PROTEIN 197 383 - -
Eupl09g00272 582 SUPERFAMILY RNA-binding domain, RBD 301 395 IPR035979 GO:0003676
Eupl09g00272 582 SUPERFAMILY RNA-binding domain, RBD 199 288 IPR035979 GO:0003676
Eupl09g00272 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 188 IPR000504 GO:0003723
Eupl09g00272 582 SMART rrm1_1 306 378 IPR000504 GO:0003723
Eupl09g00272 582 SMART rrm1_1 113 184 IPR000504 GO:0003723
Eupl09g00272 582 SMART rrm1_1 24 98 IPR000504 GO:0003723
Eupl09g00272 582 SMART rrm1_1 203 275 IPR000504 GO:0003723
Eupl09g00272 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 102 IPR000504 GO:0003723
Eupl09g00272 582 Gene3D - 193 286 IPR012677 -
Eupl09g00272 582 Gene3D - 287 392 IPR012677 -
Eupl09g00272 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Eupl09g00272 582 Gene3D - 8 103 IPR012677 -
Eupl09g00272 582 SUPERFAMILY RNA-binding domain, RBD 22 191 IPR035979 GO:0003676
Eupl09g00272 582 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 23 580 IPR006515 GO:0003723
Eupl09g00272 582 CDD RRM3_I_PABPs 201 280 - -
Eupl09g00272 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Eupl09g00272 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Eupl09g00272 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Eupl09g00272 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00272 Eupl-Chr9 8250071 8253951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00272 23 581 Eukaryotic Initiation Factors Gene Family AT2G36660 40.957 1.03e-133 401