Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00260 ATGGGGCGACGAAAGCTCGAGATGAAGAAGATAGAGAGTCTGAAAGCACGCCAAGTTTGCTTCTCAAAGCGACGTAAAGGTTTGTTCAAGAAAGCTGCGGAACTCTCCCGTCTTTGTGACGTTGAGATTCTTTCCATCGTTTTCTCTCCGGCCGGGAAACCCTTCGTCTTTTCCAGCGGCGATTCTTCTTCTTCCTCTGTCGAATCGTTGCTAGATCGATATCTCCACAACAAAAATGGTGAGTCGAGTCATCAGATTGGCGACGCTGCGATAGATCACCGTCGTCTATTGAATGTTGATATCGCCGATCTCGCCCCGAACCAGCTGGAGCCATACTTGTATAGTTTGGAGCAGATGAGATCGAATGTGATGAAGCATCTCGAAGAGAGGACAATCTCCTACGGTTCTCCAACAGAAACGATCACGATGATCAACGAAGGTAATCAAGGGTTGATTGAAGTTGGGTTCTCTGCAAATGTAGTGAGTACAAGCAACAACAACAACACTGATCAAGTGATTTCTCCTAACGGTGGAGATTCATCATGGGACACGATCAATACTTGTGATCAAGGGTTTGGATTTACAGAAGATGAGCTGTTCACTGAAGTCACGACGACGAGTAATTACAACGGTGAAGTGATTTCTCCTAACGTTGGAGATTCATCATGGAACACAATCAATACTAGTGATCAAGGGTTTGGATTTACAGAAGCGACGGCGACAGCTAGTAATACCAACCGTCAAGTGATTTGTCCTGACAAGGGAGAATGTTTGCCGTGGTCGTGGTCGACGATTAGCGCTACTGATCGTGATGAAGGGTTCGGATTGGCGGAGAACGACTGCTATAATGAGGGTACTACGATGTTGTTTGATGATGATGAATATTTTGAGGTTGATGAGCTTTTGAATTTTGACGAGGATGCGAATTTTAACGTTGACGAGCTTTTGAAGCTTGACGAGGATGAGTATTTAAATGTTTGA 981 0.4485 MGRRKLEMKKIESLKARQVCFSKRRKGLFKKAAELSRLCDVEILSIVFSPAGKPFVFSSGDSSSSSVESLLDRYLHNKNGESSHQIGDAAIDHRRLLNVDIADLAPNQLEPYLYSLEQMRSNVMKHLEERTISYGSPTETITMINEGNQGLIEVGFSANVVSTSNNNNTDQVISPNGGDSSWDTINTCDQGFGFTEDELFTEVTTTSNYNGEVISPNVGDSSWNTINTSDQGFGFTEATATASNTNRQVICPDKGECLPWSWSTISATDRDEGFGLAENDCYNEGTTMLFDDDEYFEVDELLNFDEDANFNVDELLKLDEDEYLNV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00260 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl09g00260 326 PANTHER MADS BOX PROTEIN 3 125 - -
Eupl09g00260 326 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Eupl09g00260 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl09g00260 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl09g00260 326 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl09g00260 326 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Eupl09g00260 326 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl09g00260 326 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00260 Eupl-Chr9 7978382 7979441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00260 1 79 Type I MADS-box Gene Family AT2G24840 56.962 2.97e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl09g00260 SRF-TF 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00260 - K12412 zof:122022949 92.0485