Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00255 ATGGAGAAGAGCTGGTTTCTGGCTCTTCTCCTCCTCCAAATCATTCCAGCACAATCTGCTTTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGGTGGTATTAGTGTTGGTAATGGTGGAGGTGGAGTTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGAGGGGTGTGGATTGGTGGAGGAATTTCAGGCCAAAATCCACCTGCGTCTTCAAGTTCAAGGCTCAAAGTAGCTTATACAGCCCTCCAAGCATGGAAATCTGCATTAACAGATGACCCATTTCGGATCTTAGACACTTGGGTTGGCTTTAATGTCTGTTCTTATAAAGGAGTCTTTTGTGTAGATCCTCAAGAAGACATGTCTTCATCATCAGCATCAGACCCAGTTATTGCAGGAATAGATCTCAATAATGCAAATCTTCAAGGCTCTCTAGTCAAAGAACTTTCTCTCCTCTCAGACCTCACTCTCTTGCATCTCAACAGTAACAGATTTACAGGTACTGTTCCTGATACCTTCAGAGACCTCTCATTTCTCTCAGAGTTAGACCTCAGTAACAATCACTTCTCAGGCTCTTTCCCCACAGTCACTCTTTTCCTCCCAAACCTCATTTACTTAGACCTCAGATTCAACAATTTCTCAGGACCCATCCCTGAAGATCTCTTCAACAAGAACCTTGATGCAATTTTCCTTAACAACAACCAGTTTGAAGGCCAACTTCCTCCAAATTTAGGGAACTCACCAGCTTCTGTGATAAACTTAGCAAATAATAAGTTTAGTGGGAACATCCCAACTAGTTTTGGCTACATGGGTCCTGCAATAAAGGAGGTATTGTTCCTTAATAACCAGCTAACAGGTTGCATTCCTGAGGGAGTTGGGTTTTTATCAGAGATGGAAGTATTGGATTTGAGCCACAATTCTCTGATGGGTCACTTGCCAAATTCAATGTCTTGTCTGAATGGAATTGAGGTTCTCAATTTTGCTCATAACAAGCTATCTGGGGTTCTACCTGATCTGGTTTGTTCTCTGAGAACCCTTGTTAATCTTACTGTTTCTTACAATTTCTTTTCCGGGTTTAGCCAGGAATGCAGCAGGTTGTTTTTCAGGAATGTAGGTTTCGATTTCTCATTGAATTGTATTCCGGGTAAAGACATGCAAAGGCCTCAACCAGAGTGTTCTCTGATACCAGGAGGTGGGTTGAATTGCTTGAGAATTCCTTCAACAAGGCCTTTGGTTTGTGCTTCATTGGACCAAACACCTGGGGCTACTCCAAGCTCTGCATCTTCAAACTCTCCTCCATGA 1296 0.4344 MEKSWFLALLLLQIIPAQSAFGVGVGVGVGGGISVGNGGGGVGGGGGGGGGGGGVWIGGGISGQNPPASSSSRLKVAYTALQAWKSALTDDPFRILDTWVGFNVCSYKGVFCVDPQEDMSSSSASDPVIAGIDLNNANLQGSLVKELSLLSDLTLLHLNSNRFTGTVPDTFRDLSFLSELDLSNNHFSGSFPTVTLFLPNLIYLDLRFNNFSGPIPEDLFNKNLDAIFLNNNQFEGQLPPNLGNSPASVINLANNKFSGNIPTSFGYMGPAIKEVLFLNNQLTGCIPEGVGFLSEMEVLDLSHNSLMGHLPNSMSCLNGIEVLNFAHNKLSGVLPDLVCSLRTLVNLTVSYNFFSGFSQECSRLFFRNVGFDFSLNCIPGKDMQRPQPECSLIPGGGLNCLRIPSTRPLVCASLDQTPGATPSSASSNSPP* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00255 431 Pfam Leucine rich repeat 153 211 IPR001611 GO:0005515
Eupl09g00255 431 PRINTS Leucine-rich repeat signature 177 190 - -
Eupl09g00255 431 PRINTS Leucine-rich repeat signature 293 306 - -
Eupl09g00255 431 FunFam Leucine-rich repeat extensin-like protein 1 78 244 - -
Eupl09g00255 431 Gene3D Ribonuclease Inhibitor 77 245 IPR032675 -
Eupl09g00255 431 Gene3D Ribonuclease Inhibitor 246 367 IPR032675 -
Eupl09g00255 431 SMART LRR_typ_2 293 317 IPR003591 -
Eupl09g00255 431 SMART LRR_typ_2 150 173 IPR003591 -
Eupl09g00255 431 SMART LRR_typ_2 198 222 IPR003591 -
Eupl09g00255 431 SMART LRR_typ_2 174 197 IPR003591 -
Eupl09g00255 431 SUPERFAMILY L domain-like 79 363 - -
Eupl09g00255 431 Pfam Leucine rich repeat N-terminal domain 79 112 IPR013210 -
Eupl09g00255 431 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 66 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00255 Eupl-Chr9 7879036 7880589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00255 49 391 Leucine-rich Repeat extension Gene Families AT3G24480 48.980 8.35e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00255 - - nnu:104604462 600.127