Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00224 ATGGAGGGAGGAGGTTCAAGGACTGGAGAGGTCTGTCCTCAGTTACTTGATTTGATTTCTAACGGTAGAGAATGGTTAATGAGAAGAGATGAAGGAAGAAGCTTTGGAGTTGCAGAGGAGAAAAAGCTTGAGCTTAGGCTCGGCCCACCAGGAGGAGAAGAAAACTGGTTTATGAAGGGAAATTATAAACACAACAACAGAGAAATTGATGAGTCTCCTCTCTCTCTTGCTCACTTTTCTTCCATGGCTTCCAAGACCCAGAACAACAATAGTGCAAAGAGAGGATTTTTAGATACAGTTGAAGCAAAAGCAAGAGAGGAAATTCGGATGATAAACAACATGGGAAACCAAAACCAGAAGTTTTCATCCTCAGAGAAACCAGTTGGGACTATTTTCTCTTCTCCATGGTGTGCTTCTAGTTCTTCACCATCTCCGTCTCCTTCAGTTTTCCAGATAAACACAACCCAACAGCAGCCAAACCGTTCATTTCTTCAATTCCCATCAATCCCACAAAGCTTGCCTGTTATGGCAAAGGAATCCTCACAGAATTGTAGCACAAATGTAGTAGAATTGCAGAAGTCAGAGAAGAAGGCATGTTCTCCAGCCTCTGCTTCTGTTCCTGCTAATACAGCTGTTAACAACAGCTCTCAGAAAAGAACTGCCCCTGCTCCAGTTGTGGGGTGGCCTCCAATCCGTTCATTCAGGAAGAATCTTGCAAGCAGCAGCTCTTCAAAACCAGCTTCTGAATCACAACATGCAGTTCAATCAGAAGAGGCTAGCATAAAACCTGAAAGCTGCAGAAAAGGTTTGTTTGTAAAGATCAACATGGATGGAGTCCTCATTGGAAGAAAAGTGGATCTCAAAGCTTATGACAGCTATGAAAAACTCTCCTCTGCAGTGGATGAACTTTTCAGAGGACTTCTTGAAGCTCAAAGAGATTCTTCTGCTGTTTTAAATTCTTACAACGCCGACCAAGTAAAGGCGATCACGGGTTTATTAGATGGAAGTGGGGAATATACTCTGGTTTATGAGGATAATGAAGGAGACAGGATGCTGGTTGGGGATGTCCCATGGGGTATGTTTATCTCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGCTCCGAACTTTCGGCGTTACGCCGTGAGTTTACTTTTAACTCCCTAAATAATAATACCTTTTGGGTTAACTTTAGCTTTGGATTGATCTTGGGGTTTATGTGTTGTTCTTTTCAGTTGGAAGCAGCAAGCAAGAAAAGACAACCCCTTGACTCTGGAGTGAAATGGAGGAAGAAGAGGGATGTTTGTCTTGGGAATTTCTCCATTTGA 1326 0.4299 MEGGGSRTGEVCPQLLDLISNGREWLMRRDEGRSFGVAEEKKLELRLGPPGGEENWFMKGNYKHNNREIDESPLSLAHFSSMASKTQNNNSAKRGFLDTVEAKAREEIRMINNMGNQNQKFSSSEKPVGTIFSSPWCASSSSPSPSPSVFQINTTQQQPNRSFLQFPSIPQSLPVMAKESSQNCSTNVVELQKSEKKACSPASASVPANTAVNNSSQKRTAPAPVVGWPPIRSFRKNLASSSSSKPASESQHAVQSEEASIKPESCRKGLFVKINMDGVLIGRKVDLKAYDSYEKLSSAVDELFRGLLEAQRDSSAVLNSYNADQVKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWGMFISTVKRLRVLKSSELSALRREFTFNSLNNNTFWVNFSFGLILGFMCCSFQLEAASKKRQPLDSGVKWRKKRDVCLGNFSI* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00224 441 MobiDBLite consensus disorder prediction 235 258 - -
Eupl09g00224 441 SUPERFAMILY CAD & PB1 domains 263 370 - -
Eupl09g00224 441 MobiDBLite consensus disorder prediction 199 260 - -
Eupl09g00224 441 MobiDBLite consensus disorder prediction 203 221 - -
Eupl09g00224 441 Pfam AUX/IAA family 43 379 IPR033389 -
Eupl09g00224 441 Gene3D - 264 385 - -
Eupl09g00224 441 FunFam Auxin-responsive protein 264 384 - -
Eupl09g00224 441 ProSiteProfiles PB1 domain profile. 269 373 IPR000270 GO:0005515
Eupl09g00224 441 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 376 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00224 Eupl-Chr9 7425751 7429223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00224 272 380 B3 DNA Binding Superfamily AT2G46530 31.193 7.74e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl09g00224 AUX_IAA 6.1e-74 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00224 K14484 - ming:122071934 461.84