Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00190 ATGGAAGTACAAGAATTCTTCCAGGACGGCTGCAGCCGTACAGGGACTCCACAATTCACGCCGGAAAAACGACACAAAGTTACAGAATCCAAATCCGGTGATCATTTCATCATTGAAGATCTCCTGAACTTCTCTACCGAAGACGCTGTGATTGGCGAGGGCGCATTTGACACCATTACCGGAAATTCGACCGAATCCTCTACCGTCACTGTTGTTGATAGCTGCAATTCCTCCTTCTCCGAGGACCCTCATTTTTTGGGCGACCTCGAGTGCCGGAGTTTACCCGATGCTCATTTACCTGGCGAGCTTTGGGTTCCGTACGACGACTTCGCTGAGCTCGAATGGCTCTCGAATATCGTGGACGAATCGTTCTCGAGCGATGACTTGCAGAAGCTCCAGCTGATTTCCGGGGTGAAAGCCGGCACCGAGGAAGAATCGGAAACCCGCGAATTCCAACCCGAAACCAACCGAAACAGCCCAATATTCCGATCTGAAATGTCAGTTCCCGGCAAAGCTCGAAGCAAGCGCTCCCGAGCTGCTCCCTGCAACTGGTCATCACGCCTCCTTGTTTTATCCCCGACAACATCCTCATCGGAATCCGACGTCGCGTCGGATTCCGGAAAGAAAACACCAAAAACAACACCGAAGAAGAAAGAAGCTTTGGACAATGCAGTCGGCAATGGAGACGGCCGGAGGTGCCTGCATTGCGCAACCGACAAGACTCCGCAGTGGCGGACCGGTCCCATGGGCCCGAAGACCCTATGCAATGCTTGTGGTGTCCGGTACAAGTCGGGCCGGCTCGTACCTGAGTACCGGCCCGCAGCTAGCCCCACATTTATGCTTACGAAGCACTCGAATTCGCACCGGAAGGTGATCGAGCTTCGGCGGCAAAAGGAGTTGCAGAGATCTCAGCAGCAACAGTTTCTGTACCCGAACACGGTGTTTGACACATCGAACTGTGAGGATTACTTGATTCATCACCATGCTGGGCCCGATTTCAGGCAGCTAATCTAA 1014 0.5316 MEVQEFFQDGCSRTGTPQFTPEKRHKVTESKSGDHFIIEDLLNFSTEDAVIGEGAFDTITGNSTESSTVTVVDSCNSSFSEDPHFLGDLECRSLPDAHLPGELWVPYDDFAELEWLSNIVDESFSSDDLQKLQLISGVKAGTEEESETREFQPETNRNSPIFRSEMSVPGKARSKRSRAAPCNWSSRLLVLSPTTSSSESDVASDSGKKTPKTTPKKKEALDNAVGNGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVIELRRQKELQRSQQQQFLYPNTVFDTSNCEDYLIHHHAGPDFRQLI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00190 337 Gene3D - 227 277 IPR013088 GO:0006355|GO:0008270
Eupl09g00190 337 PANTHER GATA TRANSCRIPTION FACTOR 30 305 - -
Eupl09g00190 337 FunFam GATA transcription factor 217 308 - -
Eupl09g00190 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 290 - -
Eupl09g00190 337 MobiDBLite consensus disorder prediction 195 225 - -
Eupl09g00190 337 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Eupl09g00190 337 MobiDBLite consensus disorder prediction 140 180 - -
Eupl09g00190 337 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Eupl09g00190 337 MobiDBLite consensus disorder prediction 210 225 - -
Eupl09g00190 337 MobiDBLite consensus disorder prediction 1 26 - -
Eupl09g00190 337 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Eupl09g00190 337 MobiDBLite consensus disorder prediction 195 209 - -
Eupl09g00190 337 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Eupl09g00190 337 PIRSF Txn_fac_GATA_plant 2 320 IPR016679 GO:0003677|GO:0005634|GO:0045893
Eupl09g00190 337 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00190 Eupl-Chr9 6607023 6608468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00190 76 337 C2C2-Gata Transcription Factor Family AT5G25830 53.584 9.31e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl09g00190 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00190 - - nnu:104592082 490.73