Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00159 ATGGCGGCTTCCTCTTGTTTAGCTTTTCAAGCAAATGGGTCTGTTCATAAACCCTCCTCCATCTCACCCAACTTTGATCATCTAAAGACCTTGCTATCCTCTACTGTAAAGCAGGTTCCGATGAGAATCGATGTTTCTACAACCATCAAGAACACTTCTGACAGAATTTTGAATGCATTTGTGGATTCCATGTATCAATTCGTTGATCAGTCCTTGCTCCCATCTCAGAGATCGGACACACTGTCAAGATTGCGAGTATTGAAGGGGAGATTCCAGCTGATTTTCCCTGAGGGTATTTACATAAGAAATGGCCCAAATCCTCCTTTTGGAGGATTTAAATCAACGGTTTCAATGTTCGGACGATCGAGTCAGATTTGGGTTGAAGGAGAAGGAATGCTACATGCTTTGTACCTGTTTAAAGATACTCAAGGAAGTTGGACAGTGTCATACAAGAATAGATATGTTGAGACTGAGACATTCAAACAAGAACAGTTAAGAAACAAACCCTCTTTCCTTCCAGCCGTAGAAGGGGATTCTCCTTCTATTATAGTAGCTTACATGCTGAATTTGGAAGTTGACATCATTACACTAGAAACATTGGACAATTGGGATATCGATGGAGCTTGGGATCGTCCTTTCACCAGCCATCCAAAGAAAGTTCCAGGAACTGGGGAGCTAGTTATAATGGGGGTGGATGCAGTTAAACCCTTCTTTGTTTTGGGAATAATCTCAGCCGATGGAAAGAAACTAGTCCATAAAGTAGATCTTAAGTTCAATAGAAGTAGCCTTTGCCATGAGATAGGGGTTACACAAAAGTATAATGTGATCATGGATCACCCACTTATCATAGACTTAAACAGACTCGCTAAAGGAGGCCCATTAATAAAATATGAGAAGGAAGCGTATGCAAGGATAGGGGTGATGCCTCGCTATGGTGATGCAGATTCAGTTCGGTGGTTTGAAGTAGAGACACACTGCACATTTCACAATCTAAATTTCTTTGAGAATGGTGATGAGGTAGTTGTGAGGGGATGTAGAGCTCTTGGATCAATCATACCGGGCCCTGATTTGGGTCTAAATAAATTTGAATGGTTCTCAAAAGGATTCAAACCTAGTGTTCCATGTGAAGAAAATGTCACTAGCAACATGGAAGATGGATTTCTTTTCACTCGATCGTATGAATGGAGGTTAAACATGAAAACTGGAGAAGTTAAGGAGAGAAATCTTACTGGAACCAGCTTCTCTATGGATTTCCCCATGATTAATGAGAATTTTACTGGTATTAGAAATAAGTACGGCTACACCCAAGTTGTAGATTCAATAGCAAGCTCTAGTTCTGGCATGGCTAAATATGGAATGCTAGCCAAGCTGTACTTCGAAGAGCCAGCCTCGGGGCTATCAAAGGAGGGACAATTTGAATCTGAAGAGCCGATAAAAGTGGAGTATCATAAGTTTGAGGAGAACAACTTCTACTCTGGAGCTGCTTTTGTGTCTAAGCCTGGAGGTTCTGAGGAAGATGATGGTTGGATAGTCTCTTTTGTTCACAATGAAGAGAGTAACATCTCTCAAGAGCTCTATGGGTTGTTGGACAGTAGTTGGATGCAAGATAGGAAAGATGATGAAAATGAGGCACGTGGATTAGTGGATGGTGATGACCGATACAATGCGGTGGCTATCGAATCGTCGTTGCTGGAGCCTTTCTTGAAAGATTTACGACAAGTTCCGATGAGAATCGATGTTTCTGGAGCCATCAAGAACAGTTCAGAGAGATTATTGAATGCATTTGTGGATTCCATGTTTCAATTCGTCGATCAGCCCTCACTCCCATCTCAGAATAACTTTGCACCCGTTGAAGAGATTGGACATGCCGTTAAGATTGCGAGTATCGAAGGGGAGATTCCTGCTAATTTCCCCGAGGGTATTTACATAAGAAATGGTCCAAATCCTCTTTTTGGAGGATTAAAATCGACGATTTCAATGTTCGGGCAAACGAGTCACATTTGGATTGAAGGAGAAGGAATGCTTCATGCCTTGTACTTTTTGAAAGATACTGAAGGAAGTTGGACAGTGTCATACAACAATAGATATGTTGAAACTGAGACATTCAAGCTAGAAAAGCTAAGAAACAAACCTTCTTTCCTTCCTGCCATAGAAGGTGATGCTCCAGCTATTGTAGCAGCTTATCTGTTCAACATGTTGAGGTTTGGCAAAGTTCACAAATACATTAGCAACACCAATGTATTCGAGCATTCGGGGAGGTTCTACACGATCGCAGAGAATCACTTGCCACAGGAGGTTGACATCATTACACTAGAAACCTTGGACAGTTGGGATGTCGATGGAGCTTGGGATCGTCCTTTCACCAGCCATCCAAAGAAAGCTCCAGGAACAGGGGAGCTAGTTACAATGGGGGTGGATGCAGTGAAACCTTTCTTTGTTTTGGGAATCATCTCAGCTGATGGAAAGAAACTAGTCCATAAAGTAGATCTTAAGTTCAATAGAAGTAGCCTTTGTCATGAGATAGGGGTTACACAAAAGTACAATGTGATCATGGATTATCCGCTCACCTTAGACATAAACAGACTCGTTAAAGGAGGCCCATTGATAAGGTACGAGAAGGAAGAGTATGCAAGGATAGGGGTGTTGCCTCGCTATGGTGATGCAGATTCAGTTCAGTGGTTCAAGGTAGAGGCACATTGCACATTTCACATTCTCAATTGCTTTGAGAATGGTGATGAGGTTGTGGTGATGGGATGTAGAGCTCTTGGATCAATCATACCAGGCCCGGATTTGGGTGTAAATAAATTTGAATGGTTTTCAAGAGGATTCAATCCTATTGTTCCATTTGAAGAAAATGATGATAGTAACACAGAAGATGGATTATTTTTCTCTCGTTCATATGAATGGAGATTAAACATGAAAACTGGGGAAGTTAAGGAAAGAAATCTCACTGGAACTATCTTCTCCATGGATTTCCCAATGGTTAATGAGCATTTTACTGGAGTTAGAAATAAGTATGGCTACACCCAGATCGTAGATTCAATAGCAAGCGCTAGCTGTGGCATGGCTAAATATGGAATGCTAGCCAAGCTATATTTCGAAGAGCCAGCCTCCGGGCCATCAAAGAGGGAGCAGGGACATTTTGAATCTGAAGAGCAGATAAAGGTGGAGTATCATAAGTTTGAGGAGAACAACTTCTACTCTGGAGCTGCCTTTGTCTCTAAGCCTGGAGGTTCTGAGGAAGATGATGGTTGGATAGTCTCTTTTGTTCACAATGAAGAGACTAATATCTCCCAAAAGGGTATCTTCATCATACTTCTCTTCTTCTTCTTCTTCTTCTTCGATGTCGAAGGGCAAGGCCCACCAAATGTGGACGACATGTCCGCATCGGGCAGCTCGTTCCGTCCGAGCATTGCTGTCGTCATTGGGATCTTATCGATCATGTTCTCGTTAACGTTTCTTCTTCTTGTCTATGCAAAATTCTGTCATACAACTGCGTCGGATCTCTTCACTCGTGCAACCGATCAACACCTCCATCATGGGCTAATTCGAACAAGGTCAACTAGGTTCTCCGGAATCGATAAGACGGTAATTGAGTCACTCCCTTTCTTCAGATTCTCTTCTCTAAAGGGATCAAAGGAAGGCCTTGAGTGTGCAGTCTGTCTATCGAAATTCGAAGAAACTGAAATTCTTCGATTACTGCCTAAGTGTAAACATGCGTTTCACATAGACTGTGTTGATCGATGGCTCGAGAGCCACTCCAGCTGCCCTCTTTGCCGATACAAAGTTGACGCCAGGGACCTCACTATTTTCACCTATTCAAATAGCATGAGATTCTCCATGAACCAGTCAGAGTTGACGGAGGATCCAAATCTCGAGCTCTTCGTCCGGAGAGAACAAGATGATCATCAAGGAGGGTCATCAAGGTTCAGTGTAGGAAGCAGCTTCAGAAAGATTGAGATGGGTAAGAAAGAGGAATTACAAATTCAAGAATGTGATAATGAAGACGATGATCGAAAACTCCTGCATAAGTCCAAGAACAAGACCGTAGTCTCCGACGTCGTCTTCAAGAACCGGTGGAGTGACGTGAATTCTTCGGACATATTGATGTTGAATTCAGAGATGCTTAATGAAATGTCGAGCAAGAGATTCTCTTCTTTCAATTCGAGTAGCGGTCGCTTCACACCAACCGCACTCGAAAATGTGTCTTCGCCAAATGAAAGAATAATGAAGATTAAGGAGGAGATGGAGAAGAAGAGATTGTTTGAGAATAAGGTTGGTAAACTTAATAGAAGTTATTCAGTTTCAGGTCCAGGCCTTCCTTCTACATCAGATTCCGAACTAAATAAAAATTCAAGGTTCTTGACTCCGTCAGGGAAGAGATCGATGTCGGAGATTACAAACCATTCGAGGTTTACAGATTTTGGTTGGAAAAACAGAATTAAAGAATCTTCATCATCGGCTGGTAGTGCCAAAGAGGAGAGGAGGAGGAGGCTTTGGTTCCCAATTGCAAGAAGAACAGTTAAGTGGTTCGTTGGTAGAGAAAAACGATCACAGCAATCTCAATATTCGAGACAACTTTCAATAGTGTAG 4593 0.4217 MAASSCLAFQANGSVHKPSSISPNFDHLKTLLSSTVKQVPMRIDVSTTIKNTSDRILNAFVDSMYQFVDQSLLPSQRSDTLSRLRVLKGRFQLIFPEGIYIRNGPNPPFGGFKSTVSMFGRSSQIWVEGEGMLHALYLFKDTQGSWTVSYKNRYVETETFKQEQLRNKPSFLPAVEGDSPSIIVAYMLNLEVDIITLETLDNWDIDGAWDRPFTSHPKKVPGTGELVIMGVDAVKPFFVLGIISADGKKLVHKVDLKFNRSSLCHEIGVTQKYNVIMDHPLIIDLNRLAKGGPLIKYEKEAYARIGVMPRYGDADSVRWFEVETHCTFHNLNFFENGDEVVVRGCRALGSIIPGPDLGLNKFEWFSKGFKPSVPCEENVTSNMEDGFLFTRSYEWRLNMKTGEVKERNLTGTSFSMDFPMINENFTGIRNKYGYTQVVDSIASSSSGMAKYGMLAKLYFEEPASGLSKEGQFESEEPIKVEYHKFEENNFYSGAAFVSKPGGSEEDDGWIVSFVHNEESNISQELYGLLDSSWMQDRKDDENEARGLVDGDDRYNAVAIESSLLEPFLKDLRQVPMRIDVSGAIKNSSERLLNAFVDSMFQFVDQPSLPSQNNFAPVEEIGHAVKIASIEGEIPANFPEGIYIRNGPNPLFGGLKSTISMFGQTSHIWIEGEGMLHALYFLKDTEGSWTVSYNNRYVETETFKLEKLRNKPSFLPAIEGDAPAIVAAYLFNMLRFGKVHKYISNTNVFEHSGRFYTIAENHLPQEVDIITLETLDSWDVDGAWDRPFTSHPKKAPGTGELVTMGVDAVKPFFVLGIISADGKKLVHKVDLKFNRSSLCHEIGVTQKYNVIMDYPLTLDINRLVKGGPLIRYEKEEYARIGVLPRYGDADSVQWFKVEAHCTFHILNCFENGDEVVVMGCRALGSIIPGPDLGVNKFEWFSRGFNPIVPFEENDDSNTEDGLFFSRSYEWRLNMKTGEVKERNLTGTIFSMDFPMVNEHFTGVRNKYGYTQIVDSIASASCGMAKYGMLAKLYFEEPASGPSKREQGHFESEEQIKVEYHKFEENNFYSGAAFVSKPGGSEEDDGWIVSFVHNEETNISQKGIFIILLFFFFFFFDVEGQGPPNVDDMSASGSSFRPSIAVVIGILSIMFSLTFLLLVYAKFCHTTASDLFTRATDQHLHHGLIRTRSTRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEETEILRLLPKCKHAFHIDCVDRWLESHSSCPLCRYKVDARDLTIFTYSNSMRFSMNQSELTEDPNLELFVRREQDDHQGGSSRFSVGSSFRKIEMGKKEELQIQECDNEDDDRKLLHKSKNKTVVSDVVFKNRWSDVNSSDILMLNSEMLNEMSSKRFSSFNSSSGRFTPTALENVSSPNERIMKIKEEMEKKRLFENKVGKLNRSYSVSGPGLPSTSDSELNKNSRFLTPSGKRSMSEITNHSRFTDFGWKNRIKESSSSAGSAKEERRRRLWFPIARRTVKWFVGREKRSQQSQYSRQLSIV* 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00159 1530 MobiDBLite consensus disorder prediction 1433 1463 - -
Eupl09g00159 1530 FunFam RING-H2 finger protein ATL43 1193 1267 - -
Eupl09g00159 1530 Pfam Retinal pigment epithelial membrane protein 97 522 IPR004294 GO:0016702
Eupl09g00159 1530 Pfam Retinal pigment epithelial membrane protein 617 1098 IPR004294 GO:0016702
Eupl09g00159 1530 PANTHER BETA-CAROTENE DIOXYGENASE 621 1096 IPR004294 GO:0016702
Eupl09g00159 1530 SMART ring_2 1218 1259 IPR001841 -
Eupl09g00159 1530 CDD RING-H2_EL5-like 1217 1260 - -
Eupl09g00159 1530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1192 1268 IPR013083 -
Eupl09g00159 1530 Pfam Ring finger domain 1217 1260 IPR001841 -
Eupl09g00159 1530 SUPERFAMILY RING/U-box 1197 1265 - -
Eupl09g00159 1530 ProSiteProfiles Zinc finger RING-type profile. 1218 1260 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00159 Eupl-Chr9 5951163 5973979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00159 1109 1519 C3H Transcription Factor Family AT4G28890 47.285 7.25e-106 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00159 - - msin:131224135 819.69