Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00126 ATGTCTACGCCCTTAGAACATGATTACATAGGTTTATCGGAGGTTTCTTCCATGGAAAGCTCTGAGAAGATACTCTCTTCTTCTTCTTCCTCCACTCTTTCCACTGAGGAAGATGAGAAGAACAATGCTCTTAACCTTAAGGAGACTGAGCTTAGGCTTGGTTTACCTGGTTCTGGGTCTCCTGAGAGGAAAGTTGGAAGTGGGGTTTCTTCCCTTTTAGGTGGGAGGGGGGTGGAGGATAAGAATGGATACCCACTTGGTGTACTGAAGAATTTTGTGTCTGGAGCCAAGAGGGGTTTTTCTGATGCCATTGATGGTTCTGGGAAATGGGTTTTCTCTGGGACTGGTGGATCTGAGGTTGATTTGGGAAAAGGAGGAGCTGTTTTGTTCTCTCCCAGAGGTGGGAATGGTGGGGGAAGGTCTCTTGGAGGGATGGACAATAATGGTACCCAGCATGCGGGTGTGGGTTCGGGTTCGGGTTCTGCTGCGCTGAAGGACGTTGTTGTTCCTCCATCGCCGAAGCCGGTGCAGGAGAAGAAGCAGCCTCAGATTTCTACTGCAAATGATCATGCTCCCGCTGCAAAGGCACAGGTTGTAGGATGGCCACCAATTCGATCTTTCCGGAAAAACACCATGGCAACTAACCCAGCAAAGAACAGTGATGATGCTGAAGGCAAGTCGGGTTCTGGGTGTCTATATGTGAAAGTTAGCATGGATGGTGCTCCATACCTGAGGAAGGTGGACCTCAAAACCTACAACAACTATATGGAACTCTCGTCAGCGCTTGAGAAGATGTTCAGCTGCTTTACTATTGGGCAGTGCGGTTCTCATGGAGTCCCAGGCAGAGATGGACTGAGCGAGAGTCGATTGATGGATCTTCTCCATGGCTCTGAATATGTGCTCACTTATGAAGACAAGGATGGTGATTGGATGCTCGTCGGTGACGTTCCATGGGAGATGTTCACCGACTCATGTAAGAGGCTGAGGATCATGAAGGGTTCAGAGGCAATTGGCTTAGCTCCGAGGGCCATGGAGAAGTGCAAGAACCGGAACTAA 1056 0.4934 MSTPLEHDYIGLSEVSSMESSEKILSSSSSSTLSTEEDEKNNALNLKETELRLGLPGSGSPERKVGSGVSSLLGGRGVEDKNGYPLGVLKNFVSGAKRGFSDAIDGSGKWVFSGTGGSEVDLGKGGAVLFSPRGGNGGGRSLGGMDNNGTQHAGVGSGSGSAALKDVVVPPSPKPVQEKKQPQISTANDHAPAAKAQVVGWPPIRSFRKNTMATNPAKNSDDAEGKSGSGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCGSHGVPGRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRAMEKCKNRN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00126 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 338 IPR003311 GO:0005634|GO:0006355
Eupl09g00126 351 ProSiteProfiles PB1 domain profile. 231 333 IPR000270 GO:0005515
Eupl09g00126 351 MobiDBLite consensus disorder prediction 20 76 - -
Eupl09g00126 351 MobiDBLite consensus disorder prediction 171 195 - -
Eupl09g00126 351 MobiDBLite consensus disorder prediction 143 157 - -
Eupl09g00126 351 MobiDBLite consensus disorder prediction 143 162 - -
Eupl09g00126 351 MobiDBLite consensus disorder prediction 20 39 - -
Eupl09g00126 351 SUPERFAMILY CAD & PB1 domains 228 332 - -
Eupl09g00126 351 MobiDBLite consensus disorder prediction 209 228 - -
Eupl09g00126 351 Gene3D - 226 344 - -
Eupl09g00126 351 Pfam AUX/IAA family 48 342 IPR033389 -
Eupl09g00126 351 FunFam Auxin-responsive protein 226 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00126 Eupl-Chr9 5218330 5221929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00126 205 341 B3 DNA Binding Superfamily AT5G62000 28.467 1.14e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Eupl09g00126 AUX_IAA 9.1e-93 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00126 K14484 - nnu:104595142 508.834