Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00075 ATGTCTTCTCTACAGTTCTTCCCTTCCACTTCTTCCTTGAAAAACCCTAATTTCAATTCCTCCCAATTTATCTGTCCTTTAAAAAACCCTAATTTCATTGCCACCAATTTCATGATTGTTAGCTTAAAAACCCCACATTTCAGTCGAACCCAAATCAGTTCTTTCTTCAAAAGCCCTAGTTTTCTAGGGTTTAAGCTCTCCTTCCCCAGAATTCACTCGCAGAGATTCCAATGTAGTGGAATCAAAGAATCCCGTGAGGAAACCAAACCAGTTTTGGAGTTGGAGGATGGCGGTGGAGGTGATGGGGATGGCGATGGCGATGGAGAAGAAGGCGGTGACGGCAATGGCGATGACGATGGTGGCCGGATTGGGGACAACGCCGGACCATTACCAGAATGGTTGAATTTGACCTCAGATGATGCCAAAACGGTTTTTGCAGCATTCGCTGTGACGCTTGCTTTTCGATCATTCGTGGCCGAGCCTCGATTCATTCCTTCCTTGTCAATGTACCCAACATTCAATGTTGGAGACCGAATTGTCGCCGAAAAGGTTTCATATTACTTCAGAGGGCCATGTGCCAATGATATTGTGATTTTCAAAAGTCCGCCGGTCTTGCAGGAAGCAGGATATACCGAGGGGGATGTTTTTATTAAGCGAGTTGTTGCCAAGGAAGGTGATGTTGTGGAGGTTCATGGTGGAAAGTTAATAGTAAATGGTGTTGTGAAAAATGAAGATTTCATCCTTGAGCCACCGTCTTATGACATGACCCCAATTCGGGTACCAGAGAAATCCGTCTTTGTGATGGGCGACAACCGCAATAACAGCTATGATTCACATATATGGGGTCCTCTTCCTGCCAAGAACATTATAGGAAGATCCATACTTCGTTATTGGCCACCTGCTAGGATTGGCAGCACAGTTTCTGAGAGTAGTTGCACCAGTAAGCAACAGGAGAGTAGTCCAGCTTCTTAA 972 0.4516 MSSLQFFPSTSSLKNPNFNSSQFICPLKNPNFIATNFMIVSLKTPHFSRTQISSFFKSPSFLGFKLSFPRIHSQRFQCSGIKESREETKPVLELEDGGGGDGDGDGDGEEGGDGNGDDDGGRIGDNAGPLPEWLNLTSDDAKTVFAAFAVTLAFRSFVAEPRFIPSLSMYPTFNVGDRIVAEKVSYYFRGPCANDIVIFKSPPVLQEAGYTEGDVFIKRVVAKEGDVVEVHGGKLIVNGVVKNEDFILEPPSYDMTPIRVPEKSVFVMGDNRNNSYDSHIWGPLPAKNIIGRSILRYWPPARIGSTVSESSCTSKQQESSPAS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00075 323 SUPERFAMILY LexA/Signal peptidase 155 306 IPR036286 -
Eupl09g00075 323 PRINTS Bacterial leader peptidase 1 (S26A) family signature 216 228 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl09g00075 323 PRINTS Bacterial leader peptidase 1 (S26A) family signature 260 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl09g00075 323 PRINTS Bacterial leader peptidase 1 (S26A) family signature 157 173 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl09g00075 323 ProSitePatterns Signal peptidases I serine active site. 166 173 IPR019756 GO:0004252|GO:0016020
Eupl09g00075 323 MobiDBLite consensus disorder prediction 98 114 - -
Eupl09g00075 323 MobiDBLite consensus disorder prediction 85 128 - -
Eupl09g00075 323 FunFam Peptidase/ serine-type peptidase 166 297 - -
Eupl09g00075 323 NCBIfam signal peptidase I 142 299 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl09g00075 323 ProSitePatterns Signal peptidases I signature 3. 265 278 IPR019758 GO:0004252|GO:0016020
Eupl09g00075 323 CDD S26_SPase_I 160 292 IPR019533 GO:0004252|GO:0006465
Eupl09g00075 323 PANTHER SIGNAL PEPTIDASE I 129 304 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl09g00075 323 Gene3D Umud Fragment, subunit A 154 315 - -
Eupl09g00075 323 Pfam Signal peptidase, peptidase S26 141 298 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00075 Eupl-Chr9 3728410 3734605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00075 169 299 MADS-box Gene Family AT1G29960 31.579 2.10e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00075 K03100 - nnu:104595186 395.971