Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl09g00040 ATGGCGACCGCGAAAGGGCTGTCTCAGAAAGAAGCTGACATTCAGATGATGTTGGCCGCTGATGTCCATTTAGGGACAAAAAACTGCGATTTTCAAATGGAGAGATACGTCTTTAAAAGACGAACAGACGGTATCTTTATCATAAACCTCGGGAAAACATGGGAGAAGCTTCAGCTAGCTGCAAGGGTTATTGTTGCTATTGAGAACCCTCAGGACATTATTGTTCAGTCCGCTAGGCCATATGGTCAGAGAGCAGTATTGAAGTTTGCACAGTACACGGGTGCCCACCCAATTGCAGGGAGACACACACCTGGAACATTTACAAATCAGCTCCAGACGTCCTTCAGCGAGCCTCGTCTACTCATCCTCACCGACCCCAGAACTGATCACCAGCCAATCAAGGAAGCTGCACTTGGTAACATTCCAACCATTGCCTTCTGTGATACTGATTCACCAATGAGATATGTCGACATTGGGATCCCTGCCAATAATAAGGGGAAGCACAGTATTGGCTGTCTGTTCTGGTTGTTGGCGAGGATGGTTCTGCAGATGCGGGGCACTATTCTTCCTGGGCACAAATGGGATGTGATGGTGGATTTATTTTTTTACAGGGAACCTGAGGAGGCAAAGGATCAGGAAGAAGACGAGGTCATTGCTGCCCCTGATTATGGCGTCACAGATTACACAGCAGCTGCTCTCGGTCTTCCAGGTGATCAATGGTCTGCTCCAATTGGGGATACCCAGTGGGTTCAGGAGATGGCTGCTGCTCCAGCCATTCCTGCTGCTCTTGGCGTTGATTGGGCTGCAGCTCCAGTTCCTTCGGCGGGTGATGGATGGGATGAAGCACCGGCACCGGCACCGGCACTGGCACCGGCACCGGCACCGGCACTGGCACCGGCACCGGCACCGGCACTGCCATTGGCTGCACCAGGAGTTGATGCCATTCCTCCCCCTGCTACAGGTTGGGAATGA 972 0.5206 MATAKGLSQKEADIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHPIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYREPEEAKDQEEDEVIAAPDYGVTDYTAAALGLPGDQWSAPIGDTQWVQEMAAAPAIPAALGVDWAAAPVPSAGDGWDEAPAPAPALAPAPAPALAPAPAPALPLAAPGVDAIPPPATGWE* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl09g00040 323 FunFam 40S ribosomal protein SA 13 219 - -
Eupl09g00040 323 Pfam Ribosomal protein S2 116 181 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 Pfam Ribosomal protein S2 17 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 Gene3D - 13 218 - -
Eupl09g00040 323 ProSitePatterns Ribosomal protein S2 signature 2. 118 142 IPR018130 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 44 53 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 156 170 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 14 32 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 135 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 93 110 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 PRINTS Ribosomal protein S2 signature 118 135 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 MobiDBLite consensus disorder prediction 274 297 - -
Eupl09g00040 323 SUPERFAMILY Ribosomal protein S2 9 199 IPR023591 -
Eupl09g00040 323 CDD RPS2 17 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl09g00040 323 Hamap 40S ribosomal protein SA [rps-0]. 4 270 IPR027498 GO:0003735|GO:0006412|GO:0015935
Eupl09g00040 323 PANTHER 40S RIBOSOMAL PROTEIN SA 3 288 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl09g00040 323 NCBIfam 30S ribosomal protein S2 9 205 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl09g00040 Eupl-Chr9 2634100 2638775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl09g00040 1 276 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.823 5.17e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl09g00040 K02998 - nnu:104609317 500.36