Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01357 ATGGCGGATCGATTGACTCGTATTGCCATCGTCAGCTCTGACCGATGCAAGCCCAAGAAATGCCGCCAGGAATGCAAGAAGAGTTGCCCCGTCGTCAAAACAGGTAAACTGTGTATTGAAGTCACTCCTGCATCTAAGATTGCTTTCATCTCAGAGGAGTTATGCATTGGATGTGGTATTTGTGTTAAGAAATGCCCATTTGAGGCTATCCAGATCATTAATTTGCCAAAAGATTTGGATAAAGATACAACCCATCGTTACGGCCCCAACACCTTCAAGTTGCACAGGTTACCGGTTCCAAGACCTGGTCAAGTTCTAGGTTTAGTTGGAACAAATGGCATTGGGAAGTCGACTGCTCTCAAAGTGTTGGCTGGGAAGTTGAAACCTAACTTGGGTCGCTTCAATAATCCTCCTGATTGGCAGGAAATATTGACATATTTCAGAGGATCTGAGCTTCAGAATTATTTTACTCGTATTCTGGAAGACAATTTGAAGGCAATCATCAAGCCTCAATATGTTGATCACATTCCAAAGGCAGTCCAAGGGAATGTTGGGCAAGTGCTTGACCAAAAAGATGAGAGAGACATGAAAGCTGAACTTTGTAATGATCTTGAGCTGAATCAAGTTATAGATCGGAATGTGGGTGATTTATCAGGTGGAGAGCTGCAGCGATTTGCAATTGCTGTGGTTGCTATACAGAATGCAGAGATTTATATGTTTGATGAGCCTTCCAGTTATCTTGATGTAAAACAGAGGCTTAAAGCTGCTCAAGTTGTTCGATCTTTGCTCAGGCCTAACAGCTATGTGATTGTTGTGGAGCATGACCTTAGTGTCCTAGATTACTTGTCAGACTTCATTTGCTGCTTATACGGGAAGCCGGGAGCATACGGAGTTGTAACCCTTCCTTTCTCGGTTAGAGAGGGAATTAATATCTTTTTGGCTGGTTTTGTCCCTACTGAGAATTTACGTTTTCGGGAGGAATCTCTTACATTTAAGGTTGCGGAGACTCCACAAGAAAGTGCTGAAGAGATTCAAACATATGCACGATACAGATACCCTACCATGACTAAGACTCAGGGAAATTTCAAGCTCCGTGTGATTGAGGGCGAATTTACTGATTCTCAGATAGTTGTGATGCTTGGTGAGAATGGGACGGGGAAGACAACATTCATCCGCATGCTGGCTGGTTTATTGAAGCCCGATGTAGTGGAAGGTTCTGATGTAGAAATACCTGAATTCAATGTTTCTTACAAGCCCCAGAAGATCAGTCCAAAATTTCAATCTACTGTTAGACACTTATTACATCAAAAAATTCGTGATTCATACATGCATCCTCAATTCATGTCAGACGTCATGAAACCCCTTCAAATTGAGCAACTAATGGATCAAGAAGTTGTGAATCTCTCAGGAGGGGAATTGCAAAGAGTTGCACTGTGTCTATGTCTAGGAAAGCCTGCAGACATTTATCTGATAGACGAACCAAGTGCTTATCTTGATTCGGAGCAGCGAATTGTTGCTTCAAAAGTAATAAAGAGGTTTATCCTCCATGCAAAGAAGACTGCTTTTGTCGTTGAGCATGACTTCATAATGGCAACTTACCTGGCAGATAGAGTGATTGTGTACGAGGGGAAAGCATCCATAGACTGTGTTGCCAATGCTCCGCAGTCCTTGTTGACTGGGATGAACCTTTTCTTATCTCATCTGGATATTACGTTTAGGAGGGACCCAACTAATTATCGGCCACGAATAAACAAATTGAACTCCACAAAAGACAGGGAGCAAAAATCTGCTGGGTCCTATTACTACCTTGATGATTAA 1818 0.4235 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAELCNDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFREESLTFKVAETPQESAEEIQTYARYRYPTMTKTQGNFKLRVIEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDVVEGSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFMSDVMKPLQIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKASIDCVANAPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLNSTKDREQKSAGSYYYLDD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01357 605 Gene3D - 338 603 IPR027417 -
Eupl08g01357 605 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Eupl08g01357 605 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 605 IPR013283 -
Eupl08g01357 605 CDD ABC_RNaseL_inhibitor_domain2 350 598 - -
Eupl08g01357 605 FunFam ATP-binding cassette sub-family E member 1 335 603 - -
Eupl08g01357 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
Eupl08g01357 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 542 IPR027417 -
Eupl08g01357 605 Gene3D - 1 332 IPR027417 -
Eupl08g01357 605 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Eupl08g01357 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 568 IPR003439 GO:0005524
Eupl08g01357 605 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Eupl08g01357 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Eupl08g01357 605 Pfam ABC transporter 367 496 IPR003439 GO:0005524
Eupl08g01357 605 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Eupl08g01357 605 FunFam ATP-binding cassette, sub-family E, member 1 1 332 - -
Eupl08g01357 605 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Eupl08g01357 605 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Eupl08g01357 605 ProSitePatterns ABC transporters family signature. 468 482 IPR017871 GO:0005524|GO:0016887
Eupl08g01357 605 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Eupl08g01357 605 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Eupl08g01357 605 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Eupl08g01357 605 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Eupl08g01357 605 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Eupl08g01357 605 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Eupl08g01357 605 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Eupl08g01357 605 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Eupl08g01357 605 SMART AAA_5 373 557 IPR003593 GO:0016887
Eupl08g01357 605 SMART AAA_5 102 294 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01357 Eupl-Chr8 34683259 34695167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01357 350 526 Calmodulin-binding Proteins AT2G36910 22.727 2.42e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01357 K06174 - nnu:104608080 1186.4