Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01331 ATGGGATCGAGCAGTAGCAAAGATGCGACGCCATCTTCGTCGTCGTCGTCGGGTGTTCGGAGGACTCGATCGATGAGAACTAGAGTTTTCCAGTCTTCTTGTCTCGGCCGAGCATCTGGATCTTACGACACTGACAACGATGATCAGGTTTCTGATCACCGAAACAAAGAAAATGGGAGTGGGAGTAATGAAACATGTATGGACCAAACAAGAACGGAGTCCGATCAAGTGAAACGTGAGTGTTGTGGAAAGGTTAAAGTTCAACAAACTAATGAAATGGCTTGTATCTCTTCTGATGTTGAGCTTGATGAATGGGGAGCTCAAGAAAGTGTCACTGAAACTGTCTCTAGAGCTGATAGCAGCTCTTCCCAAGCTGCCTCCACTCGATCAAGTCGTTTACATTCTCGCTTTAGTTTCATTCCTGGAAATATAAGTTTCAGACTAAGTAGAGCGGCCAGCTTGGGTTCATCAAGGGCCTCTTCTCTCTTCTCCAATGGTGTCACAATTTCAAACACTGGAGAAGGTTTTCATGTACATACAGCTCCCACCAACAGTTCAGTTGGCAGAAATGAAAATCATCGAGGAAGTGACTTGCGACCTGCATGTAGCATTAATAGATTGCCTGCAGCACAGTATGGAGATGCTTCTTCAGATACCTTACGGTTAGAACCCCTGGTCTCTGGGATTTCAGTTCCTTTGCAGGATGATGATATTGCTTCTACCCAAGATATGGCCAGAAATAATGAGAATACGGGGATCCTGACTGATGTAAATGGGCGTTCTCTGAGGAATCATACAGATATAGAGAGCATTGAAACCACACATCTCGATAGACGGGTTAGAGCTCGTGAACCCGTGGAAAGGAGTGTCCGATTTAGTCGAACCCTAAGTGTTGGAAGACTTCGTGACAGAGTTCTTCGCAGATCCTCATTTTCTGATGGATTATTTGGTCGTCTGCAAGAAGACAGAGAAGTGAGAGATTCTGGTCAGGATAACAGGAGACAGGCTCTGGGTGGTATGACAAGAACATCAGCGTCCGATGGGAACACTGAAACGCCACCAGCTTCATCTAGTTATCCTCCATCCAGTGTGTTGAATTCTTTGTACAACAATCAAGATTATGAGGTGGAGACATCACGATCCAGAGAAGCTAGATATCACAATATATTGGAGCGCAGAACAGATTTCCTTGAGAGGAGAAGAAGAATAAGATCTCAGGTCCGTGCACTGCAGCGGTTGGGTAGCCGCTTTGAGAATCTGTCTGGACATGAGAGGTCGTGTATATTGTCAGGTCAACATAGAATGGGCCATTGCGCGTGCCGCACAAGTAATCGGGCCACAAATCCAGATGATGATACAAGTGCTAGAGCTAGCATATCACGAATTGTTATGCTAGCAGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTCGTTTTGTCCTCCCGACCTTCTTTGTCTGCAATTGGATCTGTTCCTGCTCCAAAGGAAGTTGTGGAATCCATGCCTGTGAAGATATACACAAAGTTGCAAAAACATCAGAATGACGACGCTGCGCAATGTTACATATGCCTTGTGGAGTATGAGGAAGGAGATTGCATGCGGATATTGCCTTGCCATCATGAATTTCACCAGACGTGTATAGATAAGTGGCTCAAGGAGATTCACAGGGTCTGTCCACTTTGTCGCGGGGATGTTTGCAGATCCGACACTTCTGGTGTGGAGAATTGA 1740 0.4552 MGSSSSKDATPSSSSSSGVRRTRSMRTRVFQSSCLGRASGSYDTDNDDQVSDHRNKENGSGSNETCMDQTRTESDQVKRECCGKVKVQQTNEMACISSDVELDEWGAQESVTETVSRADSSSSQAASTRSSRLHSRFSFIPGNISFRLSRAASLGSSRASSLFSNGVTISNTGEGFHVHTAPTNSSVGRNENHRGSDLRPACSINRLPAAQYGDASSDTLRLEPLVSGISVPLQDDDIASTQDMARNNENTGILTDVNGRSLRNHTDIESIETTHLDRRVRAREPVERSVRFSRTLSVGRLRDRVLRRSSFSDGLFGRLQEDREVRDSGQDNRRQALGGMTRTSASDGNTETPPASSSYPPSSVLNSLYNNQDYEVETSRSREARYHNILERRTDFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRMGHCACRTSNRATNPDDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSLSAIGSVPAPKEVVESMPVKIYTKLQKHQNDDAAQCYICLVEYEEGDCMRILPCHHEFHQTCIDKWLKEIHRVCPLCRGDVCRSDTSGVEN* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01331 579 SUPERFAMILY RING/U-box 502 570 - -
Eupl08g01331 579 MobiDBLite consensus disorder prediction 1 74 - -
Eupl08g01331 579 MobiDBLite consensus disorder prediction 111 132 - -
Eupl08g01331 579 Pfam Ring finger domain 523 566 IPR001841 -
Eupl08g01331 579 MobiDBLite consensus disorder prediction 322 366 - -
Eupl08g01331 579 FunFam Putative RING zinc finger domain superfamily protein 492 571 - -
Eupl08g01331 579 SMART ring_2 524 565 IPR001841 -
Eupl08g01331 579 ProSiteProfiles Zinc finger RING-type profile. 524 566 IPR001841 -
Eupl08g01331 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 571 IPR013083 -
Eupl08g01331 579 MobiDBLite consensus disorder prediction 1 45 - -
Eupl08g01331 579 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 576 - -
Eupl08g01331 579 MobiDBLite consensus disorder prediction 334 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01331 Eupl-Chr8 34243916 34259552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01331 43 575 C3H Transcription Factor Family AT5G45290 44.689 1.80e-110 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01331 - - nnu:104603919 759.599