LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl08g01327	ATGGATGAAGGCAGTACTAGCAAGGAAGACGAATCTCGTCTTGGGGAACACTTGTTGAAGTCTCCGTGGGTTCCGAGACGGCTAGCTTTCTCTTCTTATTCTCCGCCACCGGCAGGAGGAACTGCCCAGAAATCCAGTACTTTGCGCATTATCGTAAGAAGACCGCTGGTTGTGAGATTAACCAAGGACATAGTTGAGACGTACCAAACATGTAACCCAGATTTCAAGTATTCTGAAGCATTGAATCCAAAGCGGTTCCTTACAAGCCCATCAGTCGGAGTGCTCAATGATGGCTATGATAATGCAAACTCAGATCTTATCTTGTCTGTGAACTTTGTCTTGGTTAATGTAGACTTGCCACGAAGGTATGTTGTCAAAGATGTTCTTGGCCATGGGACTTTCGGACAGGTTGTTAAGTGCTGGGTTTCAGAAACTAATAGTTATGTTGCTGTTAAGATCATTAAAAACCAACCTGCATACTACCAGCAGGCACTAGTTGAAGTCTCTATTCTGACGACGTTAAATAAGAAGTTCGATCCTGAGGATAAGCATCACATAGTTCGTATCCTTGATTACTTTGTATACCAACGTCATCTGTGCATTTCCTTTGAACTGCTTGACACAAATCTGTATGAGCTCATCAAGATGAACCAATTTAGAGGCTTATCGCTGAGCATTGTCCAAGTGTTCTCAAAACAGATCTTGCGTGCATTGGTTCTAATGAAAGATGCTGGTATCATTCACTGTGATCTGAAGCCAGAAAACATCTTCTATGTACGAGCTTGTATGGAGGATCGGACAGTTTACTCCTACATTCAGAGCCGTTACTACAGGTCTCCAGAAGTTCTTCTTGGGTATCAATACACTACAGCTATCGATATGTGGTCTTTTGGGTGCATTGTTGCGGAGTTGTTCTTAGGGCTGCCACTATTTCCAGGAGCGTCGGAATTTGATCTTCTTAGGCGGATGATAGAAATACTTGGAGGACAACCCCCTGATCATGTACTAAAGGAAGCAAAAAATACAAATAAGTTCTTTAAGCGCGTCGGGAGTGTCCACTGCTTAGAGGGCAATGAAGCTTACATGGGTGGCAGAAATGCTTACCAAACATTAACTGAAGAGGAATATGAATCTAGGGAGTTGAAAAAACCATTAATAGGGAAAGAGTATTTCAATCGTATGAAGCTCGAGGAAATTGTTACAAGCTACCCTTATCGGAGAAACTTACCTCCTGAAGAAATCTCTAGAGAAAATCTAACCCGCTTAGCAATGATTGATTTCTTGAGGGGACTCATTGAGTTTGATCCAGCGAAGCGGTGGTCACCGTTGCAGGCTTCAAAACATCCTTTTGTGACCGGGGAACCCTTTACATGCCCTTATAAACCTTCCCCAGAGACCCCTCGCATGCTTGTTGCTCAAAATGTTAAGGTGGACCACCACCCAGGTGGAGGGCACTGGTTTGCTGCTGGTCTCTCTCCCCAGGTTTCAAGCATTAACAGGGGTCCTCCACAGAATAGCCCACATTTTCAGGTGGCCCCGTTCTCTTATGCCAGTAGTTATGGCAGTTTGGGAAGCCATGGAAGCCATACCGATGGTGCTGGGCTTAGTAGCAGCTATGGAAGCTATGGGGATGATAGTTCTATGTATGCATATTATTCGCCTGTCGGTCCATCTGGTTTGAACATCCATGCACAGGGTGGAGTATCAATCCTTGGAGCCAGTCCTGATGCTAGGAGGAGGAGTTCTCAACTCTCTCATGGAAATGGACTTGGTGTTAGTCCATCTGCAGGAAATTTTGGGCCAATGTCCCTAGGTGCTAGCCCCTCACAATTTACTCCTCCTGGCTCCCATATACAGGTTTCAGCCGGTTCTCCTGGTAAGTATGGCCCAACTTCTCCAGCAAGAGGCAGTGGTGTTCATGGGTCGCCATTAGGCAAGGTGGCTGCTGTTAGCCAGTTCAACAGAAGAAGAAGTTGGGGACATCCTGGAACTTTCTCCATGCAACCTCAAGAGAATGCATCATCTCAACACTGGCAAGGGCATCACACCGATGGTGCCAGCTGTAGTCATCCCGAGGGGAACTCTCGAGGATATGGTGGTTCTCCTCGGAATGTGCAATCAACTTCTAATGTGCCAAGTCGGAGGCAGCAAAGAGGAAGCAATCGACTGACTTCTGGGTTTTCTTCAACCACAAGTCAGAACACATCAGGATCCTTTGCACTTAGTTCCAATATGCCTCTCCCTCCTACCTCAGAAGCTGCTTACGACAAGCCTGAAAGCAGTTCAATGCCCGATCCTGGAGATTGGGACCCCAATTATAGTGATGAACTTCTTTTGGAAGATGATGGTTCTGATATGAGCTCTGTAGCCTCTGAGTTCACCAATGGGATGCGCATTAGTCATGCTTTGGATTCTACAGTTCCAACGGCTGGAGTTGGAAGATTAAACCGCACCTGTTACCAGACACAGACAAGCTCACATTTATCCAACCAAAGAACAAATGGTCCAGTTCAAGCATATTCACATGTAGAGGTTGGCAGCCCGCCTTCGGCACATGATATGCATGCTGGATATGCTCGTCCCATGTCAAAGCCTTTGCATTTCATGCCTCATTTCTCACCAAGTTCTCCTAGCCGTTTCGGACAGCAACCTGTTCAGCGGTCCAACCATGGGCAATCAACATTTGTTCGCGGTGGTGAGTGGAATCATCCCAAGGTTCAGCCCCCTCCGCCCAACTGTAACACTGTGGGTCCACCTTCTCCTGGCAATAGCACATTTGCCAATGGCTCGTCATGGGGACGAAGGGCCGGACATCCCATCACCACCATTCCACCAACGTCCCATGCAAGAAAGGACTATGGAAGGATTGCCTGA	2874	0.4673	MDEGSTSKEDESRLGEHLLKSPWVPRRLAFSSYSPPPAGGTAQKSSTLRIIVRRPLVVRLTKDIVETYQTCNPDFKYSEALNPKRFLTSPSVGVLNDGYDNANSDLILSVNFVLVNVDLPRRYVVKDVLGHGTFGQVVKCWVSETNSYVAVKIIKNQPAYYQQALVEVSILTTLNKKFDPEDKHHIVRILDYFVYQRHLCISFELLDTNLYELIKMNQFRGLSLSIVQVFSKQILRALVLMKDAGIIHCDLKPENIFYVRACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDHVLKEAKNTNKFFKRVGSVHCLEGNEAYMGGRNAYQTLTEEEYESRELKKPLIGKEYFNRMKLEEIVTSYPYRRNLPPEEISRENLTRLAMIDFLRGLIEFDPAKRWSPLQASKHPFVTGEPFTCPYKPSPETPRMLVAQNVKVDHHPGGGHWFAAGLSPQVSSINRGPPQNSPHFQVAPFSYASSYGSLGSHGSHTDGAGLSSSYGSYGDDSSMYAYYSPVGPSGLNIHAQGGVSILGASPDARRRSSQLSHGNGLGVSPSAGNFGPMSLGASPSQFTPPGSHIQVSAGSPGKYGPTSPARGSGVHGSPLGKVAAVSQFNRRRSWGHPGTFSMQPQENASSQHWQGHHTDGASCSHPEGNSRGYGGSPRNVQSTSNVPSRRQQRGSNRLTSGFSSTTSQNTSGSFALSSNMPLPPTSEAAYDKPESSSMPDPGDWDPNYSDELLLEDDGSDMSSVASEFTNGMRISHALDSTVPTAGVGRLNRTCYQTQTSSHLSNQRTNGPVQAYSHVEVGSPPSAHDMHAGYARPMSKPLHFMPHFSPSSPSRFGQQPVQRSNHGQSTFVRGGEWNHPKVQPPPPNCNTVGPPSPGNSTFANGSSWGRRAGHPITTIPPTSHARKDYGRIA*	958

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	920	957	-	-
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	600	619	-	-
	Eupl08g01327	957	SMART	serkin_6	123	451	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01327	957	CDD	PKc_YAK1	123	451	-	-
	Eupl08g01327	957	Pfam	Protein kinase domain	123	451	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	699	749	-	-
	Eupl08g01327	957	ProSiteProfiles	Protein kinase domain profile.	123	451	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	573	644	-	-
	Eupl08g01327	957	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	82	454	-	-
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	576	592	-	-
	Eupl08g01327	957	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Eupl08g01327	957	SUPERFAMILY	Protein kinase-like (PK-like)	117	470	IPR011009	-
	Eupl08g01327	957	Gene3D	Transferase(Phosphotransferase) domain 1	203	452	-	-
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	658	683	-	-
	Eupl08g01327	957	Gene3D	Phosphorylase Kinase; domain 1	88	202	-	-
	Eupl08g01327	957	ProSitePatterns	Protein kinases ATP-binding region signature.	129	152	IPR017441	GO:0005524
	Eupl08g01327	957	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	86	202	-	-
	Eupl08g01327	957	MobiDBLite	consensus disorder prediction	658	779	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl08g01327	Eupl-Chr8	34194742	34210719	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl08g01327	129	328	MAP Kinase Gene Family	AT2G43790	34.802	1.15e-26	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Eupl08g01327		Pkinase	6.3e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl08g01327	K18670		-	nnu:104610320	1480.31