LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl08g01308	ATGGGCATCTTTCTGATGAAATGTCTTAGGCCAGTGATTCTTTTCGTTCTGCTGCTTTGTATTCCAACAGAAAAAAGCAGTGCTATCAGTCCTGATGGCGAGGCACTTCTTAGTTTTAAGATGGCCATCGTTGGTTCAGATGGTGTCCTCCTTCAATGGAGACAAGAGGATTCAGACCCTTGTGGCTGGAAAGGGGTGAAATGTGATGCTCAAACCAAGAGGGTGGTTAACTTGAGTCTTCCACGTCACAAATTGAGCGGATCTATATCGCCTGACATTGGGAAGCTAAAGCACTTGAAATTTTTAGATCTTTACAACAACAATTTCTATGGAACAATCCCTTCAGAATTGGGTAATTGCACAGACTTGCAAGCATTATATTTGCAGGGTAACTACTTGAGTGGATTAATTCCAGCTGAATTTGGAGACCTTTCGGATCTAGAACACCTGGATATCTCCAGCAACTCTTTAAGTGGGTCTATTCCTTCGTCACTTGGGAAGTTGACCAAGCTTTTAACATTCAACGTGTCAACCAACTTTCTGGTCGGAGTAATACCATCTGAGGGTGCGCTCATCAAATTTTCAGAAAATTCCTTTGTTGGAAATCGTAACTTGTGTGGGAAACAAATCAGTGTGACATGCAAAGATGAACCTGGAGGATCTTCAACAGAGTCTCAACCTCCAGTTTCAGAAAATCAAGGTGGCAAGAAAAAATCTGGGAAATATTCTGCTAGGCTGCTCATAAGTGCATTGGCTACAGTAGGTGCTTTACTTTTAGTGGCATTGATGTGCTTCTGGGGCTGTTTTCTTTATAAGAAGTTTGGTAGAAATGACAACAGAGGTCTTGCAATGGATGTTGGTGGAGGTGCATCCATTGTAATGTTCCATGGAGACTTGCCCTATGCTTCAAAAGATATCATTAAGAAGTTAGAGACTTTGAACGATGAACATATCATAGGCTCTGGGGGCTTTGGAACAGTATACAAGCTTGCAATGGATGATGGCAATGTCTTTGCTTTGAAAAAAATCATAAAGATGGATGAAGGGTTAGATCGGTTTTTTGAAAGAGAGCTTGAAATTCTTGGGAGCATAAAGCACCGATATCTGGTGAATTTGCGTGGATATTGCAATTCTCCTTCTTCGAAATTGTTAATTTATGATTTCTTATCTGGTGGTAGCCTAGACGAGGCACTTCATGAAAGATCTGAGCAACTAGACTGGGATGCACGTCTGAATATTATAATGGGAGCAGCAAAAGGACTGGCATATTTACATCATGATTGTTCCCCTCGAATCATACACCGTGATATAAAGTCCAGCAACATATTGCTTGATGCAAATTTGGAGGCCCGTGTATCCGACTTTGGACTCGCCAAATTGTTGGAGGATGAGGAATCTCATATCACTACCATTGTTGCTGGAACATTTGGTTATCTGGCTCCAGAGTACATGCAAAGTGGTAGAGCAACAGAAAAAACTGATGTGTATAGTTTTGGGGTTCTGGTGCTCGAAGTATTGAGTGGGAAGCGACCCACTGATGCATCGTTCATTGAGAAAGGCCTTAACATTGTTGGCTGGTTGAATTTCCTGGTTGTAGAAAGCAGGGAAAGGGAGATTGTTGATCCACACTGTGAGGGAGTACAGGCAGAGAGCCTGGATGCCCTGCTCTCAGTCGCTATCCAGTGTGTGTCATCCATCCCGGAGGATCGGCCTACCATGCACAGGGTGGTCCAGGTACTAGAATCTGAGGTCATGACCCCGTGCCCAAGCGACTTCTATGATTCCAACTCAGATTGA	1797	0.4307	MGIFLMKCLRPVILFVLLLCIPTEKSSAISPDGEALLSFKMAIVGSDGVLLQWRQEDSDPCGWKGVKCDAQTKRVVNLSLPRHKLSGSISPDIGKLKHLKFLDLYNNNFYGTIPSELGNCTDLQALYLQGNYLSGLIPAEFGDLSDLEHLDISSNSLSGSIPSSLGKLTKLLTFNVSTNFLVGVIPSEGALIKFSENSFVGNRNLCGKQISVTCKDEPGGSSTESQPPVSENQGGKKKSGKYSARLLISALATVGALLLVALMCFWGCFLYKKFGRNDNRGLAMDVGGGASIVMFHGDLPYASKDIIKKLETLNDEHIIGSGGFGTVYKLAMDDGNVFALKKIIKMDEGLDRFFERELEILGSIKHRYLVNLRGYCNSPSSKLLIYDFLSGGSLDEALHERSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVVESREREIVDPHCEGVQAESLDALLSVAIQCVSSIPEDRPTMHRVVQVLESEVMTPCPSDFYDSNSD*	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl08g01308	598	Gene3D	Phosphorylase Kinase; domain 1	290	388	-	-
	Eupl08g01308	598	SUPERFAMILY	L domain-like	29	194	-	-
	Eupl08g01308	598	Pfam	Protein kinase domain	315	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01308	598	Gene3D	Transferase(Phosphotransferase) domain 1	389	587	-	-
	Eupl08g01308	598	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	29	191	-	-
	Eupl08g01308	598	Pfam	Leucine rich repeat	123	179	IPR001611	GO:0005515
	Eupl08g01308	598	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	389	591	-	-
	Eupl08g01308	598	MobiDBLite	consensus disorder prediction	216	238	-	-
	Eupl08g01308	598	FunFam	LRR receptor-like serine/threonine-protein kinase FEI 1	287	388	-	-
	Eupl08g01308	598	ProSiteProfiles	Protein kinase domain profile.	313	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01308	598	ProSitePatterns	Protein kinases ATP-binding region signature.	319	341	IPR017441	GO:0005524
	Eupl08g01308	598	Gene3D	Ribonuclease Inhibitor	30	215	IPR032675	-
	Eupl08g01308	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	432	444	IPR008271	GO:0004672\|GO:0006468
	Eupl08g01308	598	SMART	serkin_6	313	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl08g01308	598	Pfam	Leucine rich repeat N-terminal domain	31	69	IPR013210	-
	Eupl08g01308	598	SUPERFAMILY	Protein kinase-like (PK-like)	300	580	IPR011009	-
	Eupl08g01308	598	MobiDBLite	consensus disorder prediction	216	237	-	-
	Eupl08g01308	598	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	77	581	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl08g01308	Eupl-Chr8	33915278	33935668	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl08g01308	1	589	Receptor kinase-like Gene Family	AT2G35620	72.835	0.0	859

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Eupl08g01308		Pkinase	5.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl08g01308	-		-	ming:122082534	1016.53