Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01274 ATGGGTAGGAAGCCATGTTGTAACAAGGAGGAGGTGAAGAGAGGAGCTTGGAGTAGCCATGAAGACAAGTTGCTAATGCAATTCATAACAGTTCATGGTGAAGGAAGATGGAAAACATTACCAGAGAAAGCAGGGTCGAGGAGATGTGGTAAGAGCTGCTGCTTGAGATGGTTGAATTACCTGAGACCTGATATCAAAAGGGGCAATATCACTTTGGAAGAAGAGGAGCTGATAATAAAACTGCATAAGCTGCTTGGTAATAGGTGGTCTCTAATTGCAAAACGATTACCGGGGCGGCGAACAGATAATGAAATAAAGAACTACTGGAATACATATCTTAAGAAAAAAGTCTCTGAAATCGCCTCGAAGCCGATGGTTCCTTCAAAATCTAAGAAGCTGCCCTTGATGCCCGAAACCAACGTTGTCCGAACCGAGAAAGTGCAATGCAGTATAATTGTGATACATGGTCAAGCATCTATGCAAACAAGTGACCCACGGAACGTGCTTCGGAAATGTGACGACGACGATAACGGTACCTGTACCAGGCAGGGTTTGAAGCCGGATATTGAAATCGATGGCGCAATTCATCGTTTTCCTTTGGACGTAGATGAGGAATTAGGGGATAATTGCTTAAGTGGGATTGAGTCATTTGATTTGGGATAG 663 0.4374 MGRKPCCNKEEVKRGAWSSHEDKLLMQFITVHGEGRWKTLPEKAGSRRCGKSCCLRWLNYLRPDIKRGNITLEEEELIIKLHKLLGNRWSLIAKRLPGRRTDNEIKNYWNTYLKKKVSEIASKPMVPSKSKKLPLMPETNVVRTEKVQCSIIVIHGQASMQTSDPRNVLRKCDDDDNGTCTRQGLKPDIEIDGAIHRFPLDVDEELGDNCLSGIESFDLG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01274 220 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl08g01274 220 CDD SANT 71 113 IPR001005 -
Eupl08g01274 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl08g01274 220 CDD SANT 16 61 IPR001005 -
Eupl08g01274 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 134 - -
Eupl08g01274 220 SMART sant 66 115 IPR001005 -
Eupl08g01274 220 SMART sant 13 63 IPR001005 -
Eupl08g01274 220 Gene3D - 71 136 - -
Eupl08g01274 220 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Eupl08g01274 220 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl08g01274 220 Pfam Myb-like DNA-binding domain 67 113 IPR001005 -
Eupl08g01274 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 117 IPR017930 -
Eupl08g01274 220 Gene3D - 6 67 - -
Eupl08g01274 220 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
Eupl08g01274 220 FunFam Transcription factor RAX3 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01274 Eupl-Chr8 33449911 33456113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01274 1 117 MYB Transcription Factor Family AT4G34990 67.521 1.41e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl08g01274 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01274 K09422 - msin:131249451 215.698