Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01273 ATGGTGAAGAAGACGGAGAAGTTCTTACAGAAGACGGAGAAGTTGTTTAAGAAGAAGGTGAACAAGGGAGCTTGGACAGCCGAAGAAGATAAGAAGCTCACTGACTACGTTAAGACTCACGGCGACAAGCAATGGACAACTATTCCTACTGAAGCAGGACTAAACAGATGTGGGAAGAGCTGCAGACTAAGGTGGTTGAATTATCTGAGGCCCGGAATCAAACGAGGCAATATCACTGAAGACGAGGAAGACCTTATTATCAGACTCCACAACTTGCTTGGTAACAGGTGGTCTCTAATTGCCGGGAGATTACCCGGTCGAACCGATAACGAGATAAAGAACCATTGGAATACTCATTTGAGCAAAAAGTCGTTAACAATTAACGAACTTAATCTCAAACTAAACCAAAAGCTCGAGAGCGAATCCACCAACCCTACCACCCCCACATTTCAAAATCCAAGTTCGAGTTTTGCGGTGGCGCCCGACGTAAATTGGGTCGGGATTATGAGCCCCCCTCACAATTTCAAGGACACGGACGACACAGAGATATCGAGGGAAATTAACGAATTGTTCGACAATGAGTTGGACGTTGATGGGTTCTTTAACTTCTCGGCTGCGTCGAGCTTGACAGAATCAGACCCACTTGGGACTAGCTCTGAATTAGGAGGACAAGAAGATTATAATTTGTTAAGTGAGGGATTCTATCAGAATTTGTTGGATACGGAACTGGACACACAAGGGATTAGCAGTAGCACTGAAAGTGTTGATGAGCAATTCTCTTGTAACAAATTGGATTTTGACCGGTTGACCCAGTTATTGGACTGTGAGGACGATGTACTCCTCCCTTTCTTTTAA 855 0.4444 MVKKTEKFLQKTEKLFKKKVNKGAWTAEEDKKLTDYVKTHGDKQWTTIPTEAGLNRCGKSCRLRWLNYLRPGIKRGNITEDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNTHLSKKSLTINELNLKLNQKLESESTNPTTPTFQNPSSSFAVAPDVNWVGIMSPPHNFKDTDDTEISREINELFDNELDVDGFFNFSAASSLTESDPLGTSSELGGQEDYNLLSEGFYQNLLDTELDTQGISSSTESVDEQFSCNKLDFDRLTQLLDCEDDVLLPFF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01273 284 FunFam MYB-related transcription factor 21 74 - -
Eupl08g01273 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Eupl08g01273 284 SMART sant 74 122 IPR001005 -
Eupl08g01273 284 SMART sant 21 71 IPR001005 -
Eupl08g01273 284 CDD SANT 24 69 IPR001005 -
Eupl08g01273 284 Gene3D - 22 74 - -
Eupl08g01273 284 Gene3D - 79 148 - -
Eupl08g01273 284 Pfam Myb-like DNA-binding domain 75 120 IPR001005 -
Eupl08g01273 284 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Eupl08g01273 284 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Eupl08g01273 284 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Eupl08g01273 284 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Eupl08g01273 284 CDD SANT 79 120 IPR001005 -
Eupl08g01273 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Eupl08g01273 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 17 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01273 Eupl-Chr8 33436956 33440863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01273 17 163 MYB Transcription Factor Family AT4G38620 54.902 4.25e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl08g01273 Myb_DNA-binding 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01273 K09422 - msin:131247912 279.641