Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01254 ATGGCTCCAGGAAGCAGCATTTGCAAGGAGGTTCTTGAATCTCAGGCCGCAGATATGGAATTGTCTACTGCAAACGACGAACTGGAGAATTTCAAGCATAGTAAGCCTTCCAACACATCTAATATTAAAGCAGGAATATCGTCTACTAATGGTGTGCACGAACTTCTTGAGTGCCCAGTTTGCACCAATTCAATGTACCCTCCCATACACCAGTGTCCAAATGGTCACACGCTTTGCTCAAATTGCAAACTCAGAGTGCATAATCACTGCCCTACTTGTCGATATGAACTGGGAAACATAAGATGCCTAGCTCTAGAGAAAGTGGCCGAGTCCCTTGAACTTCCCTGTCGATATCAGAACCTTGGATGCTCCGATGTGTTCCCATATTACAGCAAATTGAAACATGAGCAGCTATGTAGATTCAGGCCCTATAATTGCCCTTATGCAGGTTCGGAATGCCTGGTCACTGGTGATATCCATACACTAGTTGCTCATCTGAAAAATGATCATAAAGTGGACATGCATGATGGGTGCACATTCAACCATCGATATGTCAAATCTGATCCACAGGAGGTTGAGAATGCAACATGGATGCTCACTGTTTTTAAGTGCTTTGGACAACATTTCTGTCTCCACTTTGAGGCCTTCGTAATGGGAATGGCACCATTTTATATGGCATTCTTGAGATTCATGGGAGATGATAATGAGGCCAAGAAATTCAGCTACAGTCTAGAAGTGGGTGGCAATGGTCGGAAGCTAACATGGCAGGGAGTGCCGAGGAGCATTCGTGACAGCCACAAGAAGGTTCGGGACAGTTATGACGGGTTGGTCATTCATCGCAACATGGCACTCTTCTTCTCTGGCGGCAACAGGCAGGAACTGAAGCTGCGAGTGACTGGTCGTATATGGAAAGAACAATGA 921 0.4549 MAPGSSICKEVLESQAADMELSTANDELENFKHSKPSNTSNIKAGISSTNGVHELLECPVCTNSMYPPIHQCPNGHTLCSNCKLRVHNHCPTCRYELGNIRCLALEKVAESLELPCRYQNLGCSDVFPYYSKLKHEQLCRFRPYNCPYAGSECLVTGDIHTLVAHLKNDHKVDMHDGCTFNHRYVKSDPQEVENATWMLTVFKCFGQHFCLHFEAFVMGMAPFYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLTWQGVPRSIRDSHKKVRDSYDGLVIHRNMALFFSGGNRQELKLRVTGRIWKEQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01254 306 CDD RING-HC_SIAHs 56 94 - -
Eupl08g01254 306 SUPERFAMILY RING/U-box 52 98 - -
Eupl08g01254 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 12 109 - -
Eupl08g01254 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 299 IPR008974 GO:0005515
Eupl08g01254 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Eupl08g01254 306 FunFam E3 ubiquitin-protein ligase SINAT3 110 166 - -
Eupl08g01254 306 CDD Sina 172 300 - -
Eupl08g01254 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 162 IPR013083 -
Eupl08g01254 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 305 - -
Eupl08g01254 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
Eupl08g01254 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 167 299 - -
Eupl08g01254 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 110 IPR013083 -
Eupl08g01254 306 SUPERFAMILY TRAF domain-like 111 303 - -
Eupl08g01254 306 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01254 Eupl-Chr8 33148817 33156811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01254 1 306 C3H Transcription Factor Family AT2G41980 76.221 2.95e-180 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01254 K04506 - msin:131233149 598.971