Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01250 ATGTATGATGAGACTCATTACTTTGATACCCATGATCCCCACCTCATGCCAGGAGGATCAGTTGGTGGTCATTCTCAAACTGTTCCCTCCAACGAAGCCGCTGTCGCCACCGCCGCAGCTGTTGCTACCATGGACTTCGAATTGAAACAAGAATTCAACCCCCATTTGATGCAGGACGTGCTACTGCTACACGACCCGAACCAGGCACCGCCCTTGTATCAGCAGAATTGGGATGGTGGGGTCCAAGAGATGCAAGATATGAGTTTCCAACATCAATATGATCATCACCACCACCATGATCAAGAACAGCAAATTGCACTTCAGCAGCAGCAGCATAATCTCCAATGCTTCAATTCAAATCCCTTTGCCACACCTGACCTTCTCAACCTCTTACACTTCCCAAGATGTTCAGTGTCGTCAATGCTCCCCAATTCATCCATTTCCTTTGGCGAACTTCCGGCCATCGACAGCGCATCGGCTTCGACGGTTTTGTATGACCCACCACTTCATTTGAACATCCCTCCACAGCCTTCTATATTTAGAGAGCTATTTCACTCTTTGCCACACAGCTATGGCTTGCCAGGCTCATCAAGGGGTTGTGGTTCACTGTTTGATGGTATGGATGAGAAAGAGGGAATAGGTGTTTATGAAGATAGGGATGGGAGGCAGTTTGAGAATTCAGTGTTGGATTTCAGGAGGGAGATTAGTGGTTTGGGTAGGGGATCAGCTGAAATTAAAACCACTGAGAGGCAAAGGAGAGAGCAAGTGAATGAGAAATATGAGGCATTGAGGCTACTGGTTCCAAACCCTACTAAGTCTGATAAAGCCTCCGTGGTTGGAGATGCAATTGACTACATCAAAGAGCTTCTTAGAACAGTCGATGAGCTAAAAATACTAGTAGATAAGAAGAGATGTGGAAGAGAGAGAAACAAGAAGCTCAAGACCGAGGATGAGGCAACAGGCAACATGGAGAGCTCCTCAATGAAGCCTCTCGGTTCCCTCACCGACGAAGAGAAGTCCATCGATGGATCATTAAGGAGCTCATGGCTACAAAGGAAATCCAAAGAGACAAAAGTAGATGTCCGAATCATCCACGACGAGGTCACAATCAAGCTCATATATAGAAAGAAGATGAATTGCTTATTATTTGTATCGAAGATCCTCGACGAACTCCAGTTGAACCTCCTCCATGTCTCCGGTGGGAACATCGGAGATTATTACAGCTACTTGTTCAATACCAAGATATATGAAGGTTCTTCTGTGTATGCAAGTACAATAGCCAAGAAGCTCATTGAAGCTGTGGATAGGCACCATGCAGCTAGCTTTTAA 1329 0.4575 MYDETHYFDTHDPHLMPGGSVGGHSQTVPSNEAAVATAAAVATMDFELKQEFNPHLMQDVLLLHDPNQAPPLYQQNWDGGVQEMQDMSFQHQYDHHHHHDQEQQIALQQQQHNLQCFNSNPFATPDLLNLLHFPRCSVSSMLPNSSISFGELPAIDSASASTVLYDPPLHLNIPPQPSIFRELFHSLPHSYGLPGSSRGCGSLFDGMDEKEGIGVYEDRDGRQFENSVLDFRREISGLGRGSAEIKTTERQRREQVNEKYEALRLLVPNPTKSDKASVVGDAIDYIKELLRTVDELKILVDKKRCGRERNKKLKTEDEATGNMESSSMKPLGSLTDEEKSIDGSLRSSWLQRKSKETKVDVRIIHDEVTIKLIYRKKMNCLLFVSKILDELQLNLLHVSGGNIGDYYSYLFNTKIYEGSSVYASTIAKKLIEAVDRHHAASF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01250 442 Pfam Helix-loop-helix DNA-binding domain 248 289 IPR011598 GO:0046983
Eupl08g01250 442 CDD bHLH_AtMYC1_like 247 314 IPR045896 -
Eupl08g01250 442 SMART finulus 246 295 IPR011598 GO:0046983
Eupl08g01250 442 Gene3D - 244 303 IPR036638 GO:0046983
Eupl08g01250 442 MobiDBLite consensus disorder prediction 1 28 - -
Eupl08g01250 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 305 IPR036638 GO:0046983
Eupl08g01250 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Eupl08g01250 442 PANTHER TRANSCRIPTION FACTOR BHLH91 1 440 IPR045895 GO:0006355|GO:0048658
Eupl08g01250 442 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01250 Eupl-Chr8 33083955 33086444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01250 40 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 39.671 7.70e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g01250 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01250 - - nnu:104587288 516.538