Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01242 ATGGAGAGGATGTGTGGAAGCTACCCGTACGAGACGACGGGAGTGGTGCTCTCAAGGGATCCCAAGCCTCGTCTCAGGTGGACGCCTGACCTTCATGAGCGTTTCGTCGAGGCCGTCACCAAGCTTGGTGGACCCGACAAAGCAACGCCCAAGTCGGTGCTGAGGGTAATGGGTGTGAAGGGCTTGACGTTGTACCATTTGAAAAGCCACTTGCAGAAATATAGACTCGGAAAGCAGGCTCGAAGGGAAACCAACGTGGACCAAAGCAAAGACAGTACTGGAAATTCGGAGGGACTTAGCCCCATGCATTCCTCAGCGACAAGCACCAGCGCTTTGAGAGTGAACAATGAAGGAGAAATGCCGATTGCTGAGGCACTAAGTTATCAAATTGAAGTACAGAGAAGACTCCATGAGCAACTAGAGGTGCAAAAGAAATTACAGATGAGAATCGAGGCGCAAGGGAAGTACCTGCAAGCGATATTAGAGAAAGCGCAGAAGAGCCTGTCTTCCGATATGAACTGCACCACGAGTTTAGAGGCGACGAAAGCGCAACTCACCGACTTCAATTTAGCTCTCTCAGGCCTCATGGAGAACATGACCCAATCAACCCAAACAAGCGAAGAAGAGAGAAAAGGAGATACAGTAGGGAAGAAGAACATATCGAATGATAGCCATAAGAAGGCTCACAGTTCAGCATTCCAGCTTTACCAAGGAGAGGAGGATGAGGAGGAGAAGAAGGTGAAGATTGAGAGAGGTTCGGCTCTTTTCGATCTGAACATTAAAGGGAGCTATGAGTTTCTTGGATCCAAGGGAAATGAGTTTGATACCAAAATGCATACACAGTGGAGATAA 852 0.4847 MERMCGSYPYETTGVVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRVMGVKGLTLYHLKSHLQKYRLGKQARRETNVDQSKDSTGNSEGLSPMHSSATSTSALRVNNEGEMPIAEALSYQIEVQRRLHEQLEVQKKLQMRIEAQGKYLQAILEKAQKSLSSDMNCTTSLEATKAQLTDFNLALSGLMENMTQSTQTSEEERKGDTVGKKNISNDSHKKAHSSAFQLYQGEEDEEEKKVKIERGSALFDLNIKGSYEFLGSKGNEFDTKMHTQWR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01242 283 SUPERFAMILY Homeodomain-like 22 77 IPR009057 -
Eupl08g01242 283 MobiDBLite consensus disorder prediction 204 225 - -
Eupl08g01242 283 MobiDBLite consensus disorder prediction 89 108 - -
Eupl08g01242 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Eupl08g01242 283 MobiDBLite consensus disorder prediction 200 244 - -
Eupl08g01242 283 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Eupl08g01242 283 MobiDBLite consensus disorder prediction 76 108 - -
Eupl08g01242 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 235 IPR044848 GO:0003700
Eupl08g01242 283 Gene3D - 21 79 - -
Eupl08g01242 283 FunFam Myb family transcription factor 21 79 - -
Eupl08g01242 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
Eupl08g01242 283 Pfam MYB-CC type transfactor, LHEQLE motif 120 167 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01242 Eupl-Chr8 32946894 32954917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01242 15 211 G2-like Transcription Factor Family AT4G13640 53.922 3.22e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl08g01242 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01242 - - nnu:104596333 371.318