Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01238 ATGATCGATCATTTTTCGGCTCTGGGAATGGCCGATGAGGGAAACGAAGATCAAATCCGGAGAATGGATTTGAACTTGTATCTGGGTCTTCCTCGTCGTCCTCCCGAACTGGGTCTCGGTTCAGATCTTGCCCTAGGTTCGCTCCCTGTCCCCAGCGAAGAACAAGAAATCCAAATCCGTGTCTCCTTGGCAGAGATTTCTAGTTCGCAAACCCCATCGTATCCGTCGCTTCAATCAACGCAACCGCCATCCGAAATCACTCGAGATGGGTCCCATCTCGAGTATAGTCTGTACTCGCCATCTTACGGTCCTGTATCACCAACCGCACAAACCAGCCTAGAACAACCCCTAGATCATGACGTTGATGATCCGCTCGTCCATGCGCCTTACTTCCCTTCTTATGTTCCAATCTCACCTGTCGAACAAGATAGCACCGAAGCCATGGTCAATGAGGGTAGCAGCAACAACCATGTTGAGTATGTGCCGTACTCACTGCCTTATGTGCCGGCACCATTGTCGCCACCACCAGAACAAGCTAATGAATCAGAAGTTCAAGAAGACAACACCCATGTTCCTTATGTCCCGGTTTCACCGACCACTCATGTCCACGATGATCATCACTCCACTGAATCGCTACCTGAGGTACAGGGTTTTGGTCTGTACCGGGGACCGGTGATTCGAGATGGTTCTGCTCAACGAGAGCTTCTTCAATGTCCAGAAGTTCGTTTCCGGAGATTGATTGAATCGAACCGTCGTTCGCGGATCAGGACTCTCAGGAGGTTCAGATCAACAGTTCCGTATATTCCTATTCCGTATAGTGTCGATCCTGATTTGGGTCCATTTTCCTCGACCGCAGGCCATGTTTTTCGTGATGTAACAGTTTCCGAGAGATCGATTGAAACAAACAGCGAGACCCACAAAACAAGTGCAGAAGGCCTTGCTGCCGAGAATTTGGAAGATGAGGGAACAAGGAAGGATCAGAGCAGTGGAGCTGCTAATTTCGATTGCAATGTCTGTTTGGATGTGGCTAAGGAACCGGTTGTTACTTCCTGTGGTCATCTATTCTGTTGGCCGTGTTTGTATCAGTGGCTGCATCTTCACTCTGATCATAAGGAATGTCCCGTGTGTAAAGGAGAGGTGACAGAATCGAATATCACACCTATCTATGGGCGGGGAAGCTGTGAAAGGGAGGTTGAAAAGGAGCATCATGAAGAGGGGGATTCAAGGTTGAAGATACCCCCAAGACCCTGTGGACAGCGGTTTGAAAGTTCAAGGCAGCGGATACGCAGACCACTCTCACGGAGATCAGGGGAAGAAATTGGCTCGTGGAGGTTTATTGATGATGACGAAATGCATAATCGAGCAGAGGGGCAGGAGGAACCAAGTGTGCAAGGGATTTTTGATAGGACTAATCGTAGATTGCTCAGCAGGCTAATTGCAGCTCAGAGGTTTCAAAGGGAGGATAATTTAGAAAACAGATTGAACTTGGGGGGAAGTGGGTCCTCTAGAAGTGCTACTGAGATGTCTTCAAACCAAACTCAAAATGTTAACTCACTTCCTGATGGGCTTCATGGAGGAGGGTCAAGAAATACTCCACCTGCACATGCGCGACAGGGAATTGACTTTTGGCCCCCATTATTTTCATTTTATGGTGTCTCTACTTCTGATAGATTGGCTGCTATAGCTGCTGACCTCAACAGCGTTGTGGGGAGGATGGCAAATGGGAGCAACAATTCTGGTGCTTCAGCCTCAGCATCAATGAATCCTCAGGAATCCAATGCTCTAAATGTTCAGGGGACGCTAGAAGCAGTGGTGGCTGCAGATCAAGCTTCTGCTTCGAGCACCATTGCTGTGATTCAGGATGATACTGGAGTTCCCATTGATGCTCCTACTGAGCCAAACAGTGTGGGTTCTTCTCGTACCCTTCGAAGAAGAAGAAGAAGTAGTGTCCCTGGTTCTTTAGACGTAGATGGAGGAGTTCATCATGCCCGTAAAAGGAGAAGGCTGAACTAG 2013 0.4848 MIDHFSALGMADEGNEDQIRRMDLNLYLGLPRRPPELGLGSDLALGSLPVPSEEQEIQIRVSLAEISSSQTPSYPSLQSTQPPSEITRDGSHLEYSLYSPSYGPVSPTAQTSLEQPLDHDVDDPLVHAPYFPSYVPISPVEQDSTEAMVNEGSSNNHVEYVPYSLPYVPAPLSPPPEQANESEVQEDNTHVPYVPVSPTTHVHDDHHSTESLPEVQGFGLYRGPVIRDGSAQRELLQCPEVRFRRLIESNRRSRIRTLRRFRSTVPYIPIPYSVDPDLGPFSSTAGHVFRDVTVSERSIETNSETHKTSAEGLAAENLEDEGTRKDQSSGAANFDCNVCLDVAKEPVVTSCGHLFCWPCLYQWLHLHSDHKECPVCKGEVTESNITPIYGRGSCEREVEKEHHEEGDSRLKIPPRPCGQRFESSRQRIRRPLSRRSGEEIGSWRFIDDDEMHNRAEGQEEPSVQGIFDRTNRRLLSRLIAAQRFQREDNLENRLNLGGSGSSRSATEMSSNQTQNVNSLPDGLHGGGSRNTPPAHARQGIDFWPPLFSFYGVSTSDRLAAIAADLNSVVGRMANGSNNSGASASASMNPQESNALNVQGTLEAVVAADQASASSTIAVIQDDTGVPIDAPTEPNSVGSSRTLRRRRRSSVPGSLDVDGGVHHARKRRRLN* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01238 670 MobiDBLite consensus disorder prediction 400 434 - -
Eupl08g01238 670 SMART ring_2 336 376 IPR001841 -
Eupl08g01238 670 SUPERFAMILY RING/U-box 333 389 - -
Eupl08g01238 670 Pfam Zinc finger, C3HC4 type (RING finger) 336 376 - -
Eupl08g01238 670 ProSiteProfiles Zinc finger RING-type profile. 336 377 IPR001841 -
Eupl08g01238 670 MobiDBLite consensus disorder prediction 624 670 - -
Eupl08g01238 670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 303 512 IPR045103 GO:0005783|GO:0006511|GO:0061630
Eupl08g01238 670 MobiDBLite consensus disorder prediction 491 537 - -
Eupl08g01238 670 MobiDBLite consensus disorder prediction 492 521 - -
Eupl08g01238 670 FunFam Zinc finger family protein 316 390 - -
Eupl08g01238 670 ProSitePatterns Zinc finger RING-type signature. 351 360 IPR017907 -
Eupl08g01238 670 MobiDBLite consensus disorder prediction 68 89 - -
Eupl08g01238 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 390 IPR013083 -
Eupl08g01238 670 MobiDBLite consensus disorder prediction 297 330 - -
Eupl08g01238 670 CDD RING-HC_RNF5-like 334 377 - -
Eupl08g01238 670 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01238 Eupl-Chr8 32890653 32893358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01238 309 430 C3H Transcription Factor Family AT3G58030 52.419 1.10e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01238 K10666 - nnu:109114008 622.083