Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01234 ATGATGAGGCTACAAACATACGCTGGGCTTAGTTTTGTTGGTGCGCTTGCTGTTATATATCATGCCTTTAACAGTAGAGGGCAGTTCTATCCAGCCATGGTGTATCTATCAACCTCCAAGATCAGTTTGGTGCTTCTTCTAAACATGGGTCTGGTCATCATGTGCATTCTATGGCAGTTGACGAAACGTTTGTTCCTTGGGTCCCTCCGAGAAGCGGAGGTTGAGAGGCTGAACGAACAGTCATGGAGGGAGGTCATGGAGATTCTTTTTGCAATTACAATATTCCGACAGGATTTCTCTGTTACGTTTCTGGCAATGGTCACTGCTCTACTGTTAATTAAGGCCTTGCACTGGTTGGCCCAGAAGAGGGTTGAGTACATTGAGACAACTCCATCTGTTCCCATGTTGTCTCACATCCGCATTGTTTCTTTTATGGGCTTCCTTCTTGTTCTGGATAGTCTCTTCTTGTACAATTCCATAAAGTATTTGATACAAACATGGCAGCCTTCAGTATCACTCTTCTTTGCCTTTGAGTATATGATACTAGCAACAACAACAGTGTCAACATTTGTAAAATATGTTTTCTATGTTAGTGACATGCTTATGGAAGGACAATGGGAGAGAAAGGCAGTCTACACCTTTTACTTGGAACTTATTCGCGATTTGCTTCACTTGTCTATGTATCTCTGCTTCTTTCTTGTGATTTTCATGAACTATGGTGTGCCGCTGCACTTGATTCGAGAGCTCTATGAGACATTTCGTAACTTCAAGGTTCGGGTTGCTGATTATCTTCGATATCGAAAAATCACTTCAAATATGAATGATCGTTTTCCAGACGCAACACCTGAAGAGCTTAGTGTAAGCGATGCAACCTGCATTATTTGTCGTGAGGAGATGGTCACAGCCAAAAAGCTCATTTGTGGGCACCTTTTTCATGTGCATTGCCTCCGTTCATGGTTAGAGAGACAGCATACTTGCCCTACATGCAGAGCACTTGTCGTTCCACCTGAAAATGGGACAGCTGCAGCTGGGGGCCAACATGGAGTGCGATCTGAAGTTCATCAACAAGGAACTGGAGCGGCTAGTTCAGCAACTCAGGGTTCTAATGGTGGTCCAGCAGATGATAATTTGAGCCAGCATCAAGCTAGACTTCAAGCCGCAGCTGCAGCTGCCTCAGTATACGAGAAATCTTATGTTTATCCTTCTGCAAATACATTTGTATGGTCCCCAGGTTATGCTTTACTTCCTCAGGTTTGTATGCCTGCACCAGACTCCTGCAATACTGGAGAAAGGACAGCCTCTGGACAACCACAACACCATCAATTTGCATTCCCGGGTGGCCACACCAACTTTGCTTTTCCTCAGGTCCCACACAGCGCCTTTATCCCTTTTCAGGCACCGAATACCAATGTCACTTATAGTGACAGATCAGGCAGCGATCCAAATGGACCCGATTCTGAGGCTAAGGAAAGATTTCTCCAGCACCCGATTGAGTCTCTGCAAAACCAGCCGCAACTTCTACGGGGGCAAAAACCAGAGGTGAGCACGGGCATCAACCCTGCTACGTCAGATAGCAAGGGCAAGACTACTGCATCATCATCTTCATCCATTTCTGACTGCGGTCGTCATGGTGATGATTGA 1641 0.454 MMRLQTYAGLSFVGALAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKRLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLVLDSLFLYNSIKYLIQTWQPSVSLFFAFEYMILATTTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYGVPLHLIRELYETFRNFKVRVADYLRYRKITSNMNDRFPDATPEELSVSDATCIICREEMVTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTAAAGGQHGVRSEVHQQGTGAASSATQGSNGGPADDNLSQHQARLQAAAAAASVYEKSYVYPSANTFVWSPGYALLPQVCMPAPDSCNTGERTASGQPQHHQFAFPGGHTNFAFPQVPHSAFIPFQAPNTNVTYSDRSGSDPNGPDSEAKERFLQHPIESLQNQPQLLRGQKPEVSTGINPATSDSKGKTTASSSSSISDCGRHGDD* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01234 546 Pfam Ring finger domain 291 330 IPR001841 -
Eupl08g01234 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Eupl08g01234 546 SUPERFAMILY RING/U-box 272 336 - -
Eupl08g01234 546 MobiDBLite consensus disorder prediction 351 377 - -
Eupl08g01234 546 PANTHER RING ZINC FINGER PROTEIN 1 525 - -
Eupl08g01234 546 MobiDBLite consensus disorder prediction 496 539 - -
Eupl08g01234 546 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Eupl08g01234 546 CDD RING-H2_synoviolin 289 330 - -
Eupl08g01234 546 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Eupl08g01234 546 SMART ring_2 292 329 IPR001841 -
Eupl08g01234 546 MobiDBLite consensus disorder prediction 468 546 - -
Eupl08g01234 546 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01234 Eupl-Chr8 32812117 32826303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01234 1 534 C3H Transcription Factor Family AT3G16090 64.750 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01234 K10601 - nnu:104587248 845.114