LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl08g01219	ATGGGCAGAAAACTCCAAGAAGCTGCGCTTTTCAGCGAACCAGAAACCCTAGCAATCGTCGAGAAGTCGAAGAAGAAGAAGAGCAAGAAATTCAAAACTAGTGATTTCATCGAGGAAAACCAAACACAACTGTTAGAGAATCAGAAAGGAGAAGCGAAGACAAAAAGGAAGCACGGGGAGGAGATCGAGCTTGTTCATGGAGAAGAAAACGATACCCTAGAAGTCTCAGAAAGCAATGGGAAAGGCGCCAAGAAGAAGAAGCAGAAGAAACCGAAGGAAGTGAACTCGAGTGAAGAACTCGAAACCATAGAAGTATCAGACAAGAGTAACAAGAAGCAGAAGAGATCTGATGAAGTCGACGGAGTGACTGTGTCCGGAAAAGGTGCAAAGGAACCGAAGTACGCAGCTTTGAGCTCTTTCACTGAATCGGGCCTTCCCGATGAAGTACTCGAATGCTGCAAGAACTTCAGCAAGCCATCTCCTATTCAATCTCATGCTTGGCCTTTCCTTTTGGACGGTCGAGATTTCATTGGGATTGCGGCGACTGGGTCAGGCAAAACGTTGGCATTTGGGGTTCCTGCTCTCATGCATATTTTGCGCAAGGAAAAAAAGAAAGCATCAAAGAGAGTATATCCTCTTTGTCTTGTACTCTCACCTACAAGGGAGCTAGCTCAACAAATTGCAGATGTTCTTTGTGAAGCTGGGAAGCCCTGTGGCATTAGAACAGTTTGTGTGTATGGAGGAACTTCCAAAGGACGTCAAATATCTTCTCTTAAGTCTGGAGTTGATATTGTTATTGGAACTCCTGGTCGTTTGAAAGATCTGATTGAAATGGGTGTGTGCTGCCTAAAGGAGGTATCTTTTGTGGTTCTGGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACCAGAAGTTCGCGCTATATTGAACCAAACATGCTCTACCCGCCAGATGGTAATGTTCAGTGCAACATGGCCTCCTTCTGTTCATCAATTAGCTCAAGAATTTATGGATCCAAATCCTGTTAAGGTTGTCGTGGGTTCAGAGGATTTGGCTGCCAACCACGATGTTATGCAAATAGTAGAGGTCTTGGATGATAGGTCTCGCGATGCACGTTTGGTCACCTTGCTAGAAAAATACCACAAGTCTCAAAGGAACAGAGTATTGGTATTTGTCTTGTACAAGAAGGAAGCAGCTCGTGTTGAAAATATGCTTCAAAGAGGGGGTTGGAAGGCCGTTTCTATACATGGTGACAAATCTCAACATGATCGTACAAAGGCACTTTCGCTATTCAAGGAGGGAACCTGCCCTTTAATGGTTGCCACTGATGTAGCTGCTAGAGGATTGGACATTCCGGATGTTGAAGTAGTGATCAACTACAGCTTCCCTCTCACAACCGAGGATTATGTTCACAGGATAGGGAGGACTGGTCGGGCTGGTAAGAAGGGTGTTGCTCACACCTTTTTTATGCAGGAAAACAAGGGACTTGCCGGGGAGCTGGCGAATGTTCTCAGAGAAGCCGGGCAGATTGTGCCTGCTGCCCTTACGAATTTTGGCACTCATGTGAAGAAAAAGGAATCCAAGCTATATGGATCCCACTTTAAAGAAATTGCAGTGGATGCTCCGAAGTCTACAAAAATAACCTTCAACAATTCAGATGATGAAGATTGA	1674	0.4486	MGRKLQEAALFSEPETLAIVEKSKKKKSKKFKTSDFIEENQTQLLENQKGEAKTKRKHGEEIELVHGEENDTLEVSESNGKGAKKKKQKKPKEVNSSEELETIEVSDKSNKKQKRSDEVDGVTVSGKGAKEPKYAALSSFTESGLPDEVLECCKNFSKPSPIQSHAWPFLLDGRDFIGIAATGSGKTLAFGVPALMHILRKEKKKASKRVYPLCLVLSPTRELAQQIADVLCEAGKPCGIRTVCVYGGTSKGRQISSLKSGVDIVIGTPGRLKDLIEMGVCCLKEVSFVVLDEADRMLDMGFEPEVRAILNQTCSTRQMVMFSATWPPSVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDARLVTLLEKYHKSQRNRVLVFVLYKKEAARVENMLQRGGWKAVSIHGDKSQHDRTKALSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKGLAGELANVLREAGQIVPAALTNFGTHVKKKESKLYGSHFKEIAVDAPKSTKITFNNSDDED*	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl08g01219	557	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	94	518	-	-
	Eupl08g01219	557	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	167	344	IPR014001	-
	Eupl08g01219	557	MobiDBLite	consensus disorder prediction	91	121	-	-
	Eupl08g01219	557	CDD	DEADc	154	345	-	-
	Eupl08g01219	557	Gene3D	-	348	523	IPR027417	-
	Eupl08g01219	557	SMART	helicmild6	400	481	IPR001650	-
	Eupl08g01219	557	SMART	ultradead3	155	361	IPR014001	-
	Eupl08g01219	557	Gene3D	-	83	347	IPR027417	-
	Eupl08g01219	557	Pfam	Helicase conserved C-terminal domain	373	481	IPR001650	-
	Eupl08g01219	557	MobiDBLite	consensus disorder prediction	49	82	-	-
	Eupl08g01219	557	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	373	520	IPR001650	-
	Eupl08g01219	557	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	138	164	IPR014014	GO:0003724
	Eupl08g01219	557	CDD	SF2_C_DEAD	358	490	-	-
	Eupl08g01219	557	Pfam	DEAD/DEAH box helicase	161	332	IPR011545	GO:0003676\|GO:0005524
	Eupl08g01219	557	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	290	298	IPR000629	-
	Eupl08g01219	557	FunFam	ATP-dependent RNA helicase RhlB	347	524	-	-
	Eupl08g01219	557	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	494	IPR027417	-
	Eupl08g01219	557	MobiDBLite	consensus disorder prediction	42	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl08g01219	Eupl-Chr8	32553629	32568954	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl08g01219	156	501	Eukaryotic Initiation Factors Gene Family	AT1G72730	33.237	1.57e-53	185

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl08g01219	K14811		-	nnu:104600395	853.588