Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01194 ATGTTCGATTGTGGTTTCAAGTCGCAGTATACGGGTGGCCAGAGAGAGAAGTTTGTAAGGTTGGACGACTTGGATTCCAGATTATCGTTGTCTTCTGATACGGGTGGAATGAACAGATGTGGATTCAATATCGAGGGGTTGAATCGTGCTGGTCCTGCAACCAACACCCCATCAAAATCATTTAAGAGAGGAATGAGAAAGGGATCTGAAGGACTCAAATCAATTGGTCGATCACTTCGGTTTGGGGTTTCTCGGGGGGTGTTCCCAGAAGATCTTAAAGTGTCAGAGAAGAAGATATTTGACCCTCAAGACAAATTCCTTCAATTTTGGAATAGGCTTTTTGTCATATCGTGTATTCTTGCAGTATCTGTGGATCCTTTGTTTTTTTATCTTCCCGTCATCAATTATGAATCGTATTGTCTCGGTATAGATCGGAATTTAGCAATCACAACAACAACATTGCGGACAATCATTGATGCTTTTTATTTAATTCGCATGGCACTCCAGTTCCGCACAGCTTATATTGCCCCTTCATCCCGGGTTTTTGGTCGAGGTGAACTTGTGATAGATCCTGCACAAATAGCTAAGCGGTACTTGCGATGGCAGTTTATCATAGATTTTCTTGCTGTGTTACCCCTACCACAGGCTGTAGTTTGGAGATTTCTTCAAAGAGCAAAAGGTCGAGATGTACTGGCTACAAAACAGGCATTGCTTTTCATTGTCTTGCTTCAATATATCCCCAGGTTTTTCCGGATGTTACCCTTAATTTCAGAGCTGAAAAGGACTGCCGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCCGCATACTATTTACTGTGGTACATGCTTGCTAGTCATATAGTTGGGGCTTTCTGGTACTTATTAGCTCTGGAACGTAATGATACATGCTGGCAGAAAGCTTGTGTTGAAATTGGGAAGTGCAATACAAATTACTTGTATTGTGGCAACCGGCATATGGAAGGTTATGATACCTGGCGCAACATCAGTAAGGAGGTTCTTGATAAGGCGTGCTCTGTAGATGACGACAATTCACCATTTAATTTTGGAATCTATAAACAGGCTCTCTCGTCCCATGTTGTTTCATCCAAGAAGTTCCTGTCTAAATACTGTTACTGTTTGTGGTGGGGCCTACAGAATTTGAGTACACTTGGCCAAGGACTCCAAACCAGTACCTATCCTGGAGAGGTCATCTTTTCCATAGCACTTGCCATTTTTGGGCTCATCCTTTTCGCACTTTTGATTGGCAACATGCAGACTTATCTTCAGTCTCTTACAATTCGGCTTGAAGAGATGAGAGTTAAAAGACGTGATTCAGAGCAGTGGATGCATCATCGCTTACTTCCACAAGATCTCAGGGAGCGGGTCAGGCGGTACGATCAGTACAAGTGGTTGGAAACACGAGGGGTGGACGAAGAGAACCTGGTTCAGAGCCTTCCAAAGGACCTCAGGAGGGATATCAAACGGCATCTCTGTTTGGCTTTGGTGAGAAGGGTTCCTCTGTTTGAGAATATGGATGAGCGATTGCTAGATGCCATTTGCGAGCGATTGAAACCAAGTTTGTACACAGAGAGAACTTACATCGTGCGGGAAGGGGACCCAGTGGATGAGATGCTCTTCATCATACGTGGTCGCATGGAGAGTGTGACAACTGATGGCGGGAGGAGTGGATTTTTCAACCGAAGTCTTCTGAAAGAAGGGGATTTTTGTGGGGAGGAGCTCCTAACCTGGGCTCTAGACCCCAAATCCGGTTCTAACCTCCCATCATCTACTCGGACAGTGAAGGCTTTGACAGAGGTGGAGGCTTTTGCCTTGATAGCAGAAGAGTTGAAGTTTGTCGCCAGTCAGTTTAGGCGCCTTCATAGCAGACAGGTTCAGCACACGTTCCGCTTCTATTCACAGCAGTGGAGGACATGGGCTGCCTGCTTCATCCAAGCAGCTTGGAGGCGGTATTCCAAGAGGAAGATTGTGGAGCTTCGTCGTAGGGAAGAAGGGTCGGGTGAGGCTAGTGACAGTGGTGGGGGCGGTTCGACCAGTCTTGGTGCGACCATCTATGCTTCCCGGTTTGCGGCAAATGCCCTTCGTGGGGTCCACAGGCTCCGGAATACCAAGAGTGCAAGGGACTTGGTGAAACTGCAGAAGCCTCCAGAACCTGACTTCACTGTTGATGATGCAGATTAA 2199 0.4634 MFDCGFKSQYTGGQREKFVRLDDLDSRLSLSSDTGGMNRCGFNIEGLNRAGPATNTPSKSFKRGMRKGSEGLKSIGRSLRFGVSRGVFPEDLKVSEKKIFDPQDKFLQFWNRLFVISCILAVSVDPLFFYLPVINYESYCLGIDRNLAITTTTLRTIIDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRWQFIIDFLAVLPLPQAVVWRFLQRAKGRDVLATKQALLFIVLLQYIPRFFRMLPLISELKRTAGVFAETAWAGAAYYLLWYMLASHIVGAFWYLLALERNDTCWQKACVEIGKCNTNYLYCGNRHMEGYDTWRNISKEVLDKACSVDDDNSPFNFGIYKQALSSHVVSSKKFLSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPSLYTERTYIVREGDPVDEMLFIIRGRMESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKIVELRRREEGSGEASDSGGGGSTSLGATIYASRFAANALRGVHRLRNTKSARDLVKLQKPPEPDFTVDDAD* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01194 732 Gene3D Jelly Rolls 505 625 IPR014710 -
Eupl08g01194 732 MobiDBLite consensus disorder prediction 713 732 - -
Eupl08g01194 732 Gene3D - 112 432 - -
Eupl08g01194 732 Pfam Ion transport protein 108 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Eupl08g01194 732 Pfam Cyclic nucleotide-binding domain 528 617 IPR000595 -
Eupl08g01194 732 SUPERFAMILY cAMP-binding domain-like 436 626 IPR018490 -
Eupl08g01194 732 CDD CAP_ED 507 638 IPR000595 -
Eupl08g01194 732 Gene3D Helix hairpin bin 435 498 - -
Eupl08g01194 732 ProSiteProfiles IQ motif profile. 643 672 IPR000048 GO:0005515
Eupl08g01194 732 FunFam Cyclic nucleotide-gated ion channel 1 434 498 - -
Eupl08g01194 732 ProSiteProfiles cAMP/cGMP binding motif profile. 507 591 IPR000595 -
Eupl08g01194 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 726 - -
Eupl08g01194 732 SUPERFAMILY Voltage-gated potassium channels 101 429 - -
Eupl08g01194 732 SMART cnmp_10 507 638 IPR000595 -
Eupl08g01194 732 FunFam Cyclic nucleotide-gated ion channel 1 505 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01194 Eupl-Chr8 32111347 32126120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01194 12 729 Ion Channels AT5G57940 77.222 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01194 K05391 - nnu:104593394 1214.91