Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01187 ATGGAGTTATTTCCAGCCCAACCTGATCTATCTCTTCAAATTAGTCCTCCAAACAGCAAACCCACATCAGGTTGGAGAAGAACAGATGAAGAGATGGATTTGGGTTTTTGGAGAAGAGCTTTAGATTCTAATCATACCATGGCTTCCATGGCGAAACCTGATGCTTCTTTCGAGCTGTCCTTGGCAAATCCAAGGGTCTCAGAATCTAACTCCAACGATCTTCATCATTTTCATCATGGGCATCATGGAAATCTTATCCAATCCCATCAACTCCACCATCATCATCAACAACAACAGCATCATCATCAGCAGCAGCAGCATAACCAACAACAGCAACAGCTACATCAACAAGGACTTCATCAAGAGCTTAGTTTCTTAAGGCCCATAAGAGGAATACCTGTTTACCATAACCCTCCTTCCTTCCCTTTTGTTCAACAACAACCATTAGAATCTTCTTCTTCTTCTACTAGTACTACTACTTCCAATTCCTTCCAGTCTCAAGGTTTGATTAGATCAAGATTCCTCACAAGGTTTCCTGCAAAGAGAAGTATGAGAGCACCTCGAATGCGATGGACAACCACCCTCCATGCCCGCTTTGTTCATGCTGTTGAGCTCTTGGGTGGCCATGAAAGGGCTACACCCAAGTCAGTTCTTGAGCTCATGGATGTTAAGGATCTCACTTTGGCTCATGTGAAATCCCATTTACAGATGTATCGGACGGTAAAGACGACCGACAGACCTGCGGCTTCTTCAGGCCAAATGGATGGATATGAAAATGGATCAACCAGAGAAATCTCCGACGATATCATGCTAGAAATTCACAACCCGCGAGGGTCGTCTGAGATATCAGTGCCACAGGGAAGGCCAAATATGAATCAAGATCAGGATTATCGTAGCCTCTGGAGCAATTCTTCGAGCAGGGAAGCTTGGTTGCATGGCAAAACAAGGGATTATGGAGGAAACACTCCCCCTTTTGAGAAGGAGATGGACCCAAAGTTCTTGAGCCATGAGAGAATATCAGATTTGAACTCAACAAGCCTTTCAGCTGGGACAAGCCCCAAGAAGCCAAATCTGGAGTTCACATTGGGCAGGCCACATTGA 1101 0.4487 MELFPAQPDLSLQISPPNSKPTSGWRRTDEEMDLGFWRRALDSNHTMASMAKPDASFELSLANPRVSESNSNDLHHFHHGHHGNLIQSHQLHHHHQQQQHHHQQQQHNQQQQQLHQQGLHQELSFLRPIRGIPVYHNPPSFPFVQQQPLESSSSSTSTTTSNSFQSQGLIRSRFLTRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRPAASSGQMDGYENGSTREISDDIMLEIHNPRGSSEISVPQGRPNMNQDQDYRSLWSNSSSREAWLHGKTRDYGGNTPPFEKEMDPKFLSHERISDLNSTSLSAGTSPKKPNLEFTLGRPH* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01187 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 240 IPR006447 GO:0003677
Eupl08g01187 366 Gene3D - 186 243 - -
Eupl08g01187 366 Pfam Myb-like DNA-binding domain 188 239 IPR001005 -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 1 27 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 278 297 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 102 118 - -
Eupl08g01187 366 SUPERFAMILY Homeodomain-like 184 240 IPR009057 -
Eupl08g01187 366 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 366 IPR044847 GO:0000976|GO:0006355|GO:0010158
Eupl08g01187 366 MobiDBLite consensus disorder prediction 337 366 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 88 118 - -
Eupl08g01187 366 FunFam Myb family transcription factor 185 243 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 279 297 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 338 355 - -
Eupl08g01187 366 MobiDBLite consensus disorder prediction 140 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01187 Eupl-Chr8 31942690 31947888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01187 102 365 G2-like Transcription Factor Family AT5G16560 43.077 2.10e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl08g01187 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01187 - - nnu:104611466 501.516