Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01184 ATGTATGGAGATTGCCAAGTACTGTCATCCATGGGAGGGAGCGTAGTTCCTTCAGACTCGCTCTTCTCGTCATCGATTCAAAACCCTAATCTTAACTTCATGGTTAACATGCCTTTCCATCCTTTCTCTGCAATTATTCCGAAAGAAGAAATCGGGTTACAGAGAGGAGGTAAGGAGGAAGAGATGGAAAGTGGGTCTGGAAGTGGACACGTGGATGGAGCATCCGCTGATGAGCAAGAGAATGAGCAACAACCTAATAAGAAGAAACGCTATCACAGGCACACTGCTCGCCAGATTCAAGAAATGGAAGCTCTGTTTAAGGAATGTCCACACCCAGACGACAAGCAGCGGATGAAATTGAGCCAAGACCTCGGCCTTAAACCTCGCCAAGTTAAATTCTGGTTCCAAAACCGGCGTACCCAGATGAAGGCACAACAAGACCGAGCAGACAACGTGATACTTAGAGCAGAGAACGAGAACCTAAAGAATGAGAACTACCGTCTGCAAGCGCGTTAA 516 0.469 MYGDCQVLSSMGGSVVPSDSLFSSSIQNPNLNFMVNMPFHPFSAIIPKEEIGLQRGGKEEEMESGSGSGHVDGASADEQENEQQPNKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01184 171 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Eupl08g01184 171 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Eupl08g01184 171 CDD homeodomain 88 146 IPR001356 GO:0003677
Eupl08g01184 171 Coils Coil 144 171 - -
Eupl08g01184 171 MobiDBLite consensus disorder prediction 54 96 - -
Eupl08g01184 171 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Eupl08g01184 171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 170 IPR042160 -
Eupl08g01184 171 FunFam Homeobox-leucine zipper protein HDG1 75 161 - -
Eupl08g01184 171 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Eupl08g01184 171 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Eupl08g01184 171 SMART HOX_1 86 149 IPR001356 GO:0003677
Eupl08g01184 171 Gene3D - 74 159 - -
Eupl08g01184 171 SUPERFAMILY Homeodomain-like 69 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01184 Eupl-Chr8 31876418 31877775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01184 25 170 Homeobox Transcription Factor Family AT5G46880 58.929 7.30e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Eupl08g01184 Homeodomain 4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01184 - - vvi:100253940 278.87