Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01179 ATGAGCTTTCAAGATCTTGAATCTGGTCGCCCTTTGGGTTCAAGGCGAGAGTACATAAACGGTAAGCAGGATCCCACGCAAGCTGTTGCATCCGGCGTGTTTCAGATCAACACGGCCGTCTCGACGTTCCAGCGCCTCGTTAATACCCTCGGAACGCCCAAGGACACGCCTGAGCTCCGGGAGAAGTTGCACAAGACAAGGTTACATATTGGACAGTTGGTGAAGGATACCTCAGCCAAACTGAAACAAGCAAGTGAAACAGATCAGCATACTGAAGTTAGTGCCAGCAAGAAGATTGCCGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTCTGAAAGAGTTTCAGAAGGCTCAACGTCTTGCAGCTGAAAGAGAAACAGCATATGCCCCTTTTGTCCCCCAAGCAGTTCTGCCTTCCAGCTATACTGCAAGCGAGGTAGACATAAATTCAGATAAGAATCCAGAACAGCGTCTTCTTCTTGTGGAATCTAGAAGACAGGAGGTCTTGCTACTGGACAACGAGATTGTTTTCAATGAGGCCATCATTGAGGAAAGAGAGCAAGGAATCCAAGAGATCCAGCAACAGATTGGTGAGGTGAACGAGATTTTTAAAGATCTTGCTGTGCTGGTCCATGAACAAGGAGCTATGATCGATGATATCGACTCCAACGTTGAGAGCTCTTACGCGGCAACTGTACAGGCGAAATCCCAACTTGCGAAAGCATCCAAGACCCAAAGATCAAATTCATCTCTGACCTGCTTGCTGTTGGTGATATTTGGGGTCGTCCTGCTCATTGTGATCATAGTCCTCGCAGCTTAA 822 0.4732 MSFQDLESGRPLGSRREYINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASETDQHTEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYAPFVPQAVLPSSYTASEVDINSDKNPEQRLLLVESRRQEVLLLDNEIVFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIDSNVESSYAATVQAKSQLAKASKTQRSNSSLTCLLLVIFGVVLLIVIIVLAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01179 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Eupl08g01179 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Eupl08g01179 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Eupl08g01179 273 CDD SynN 23 148 IPR006011 GO:0016020
Eupl08g01179 273 CDD SNARE_Qa 200 241 - -
Eupl08g01179 273 MobiDBLite consensus disorder prediction 1 22 - -
Eupl08g01179 273 FunFam Syntaxin-22 like 20 133 - -
Eupl08g01179 273 PANTHER SYNTAXIN 27 264 IPR045242 -
Eupl08g01179 273 Gene3D - 175 273 - -
Eupl08g01179 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl08g01179 273 Gene3D - 20 133 - -
Eupl08g01179 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Eupl08g01179 273 SMART tSNARE_6 175 242 IPR000727 -
Eupl08g01179 273 Pfam SNARE domain 217 268 IPR000727 -
Eupl08g01179 273 FunFam Syntaxin-22 like 173 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01179 Eupl-Chr8 31771268 31780883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01179 1 261 SNARE and Associated Proteins AT5G46860 78.161 3.42e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01179 - - msin:131239666 427.172