Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01170 ATGAAAAAGGGCAGAAAAGGAAAACAAGAACAGGGTCTTCTGCAACCCGTCGACGAGAATTGGACCGTTAAGCCCCTCAATCAAGACGACCAAGATCTTACGCACCAGCAGCAACAGCAACAGCAACAACAACAACAACAACAACAACGACAACAACATCAAACACCCAATTTCGAAAACCAATCATCTCTCCTTTCTGATTCTCAACAAAATCTCGATTCCTCAACCATACCCATCTCGGATTTCATCCCCAAAACCCGGAGAACACCCTCGAATCGTCGGAAATATAAAGGGTTATCTCAAAATCGACGTGCCCATGTCACCGAAACTCCACAATTCGAAGTGAGTTCTTCGCTTCCTAGCAAGGAAGAGATGGAGGAGGAAGAAGTGGAGAAATCTAGAGATGATGGGTATACCTCAGAATCGATGACTAATCCAACGGAGCAGTTAGTCGAGGCTTCTCAGTCCTTCAAGGAAGTTAAAGATATCGCGAGTCGATTAGAAGAGCTTACATTGGCAACGGAAGAACCCGAATTGTCGGAGGAGCAGCTGAGAATCAACAACCAGTTGCAGGAAGATGAGTTACTCGCAATGGAGGCCATCTATGGGGACAGTGTCTTTATCCTTAACAGAGAGGGAGGCTTACTATCTTTTCAGATCCGTATACATATTGAAGCTCCCGATGAACTTACAATATCCACAAAGCTTCATTCATCCAGTGAAAAGGTCGGATTTGGAGGAAAATCCAGTGACGCAAGAACCGACAATTCGAATGAGTTCCTGTATGCTTTCAAAGTTCAGTATCTCCCCCCAGTTGAGTTGACATGTTTATTACCCAGCACATACCCAAGCCATCTCCCTCCATATTTTACCATCTCTGTTCAGTGGTTGGATTCCATGAGGATTTCCAATCTTTGCCACATGTTGGATTTATTGTGGATGGATCAACCAGGGCAGGAAGTTATATACCAATGGGTGGAATGGCTACACAGTTCTTCTCTTTCTTACTTAGGGATTGATAAAGAAATAATCCTCGGCCCCTATAACATACCAGATGCTGGAGACAGTCGTGCGGTTTCAGGAAGTGTATATCCAGATGTTGATATACCTTCAATAATGAATTACAACGATGAGAAATGCCACGATATTTTTCGTAAAAATCTACATGAATGCAGCATCTGTTTTAGCGAATATGCAGGCACAGAGTTCATCAAATTGCCATGCCAACATTTCTTCTGTTGGAAATGCATGGAGACTTATTCAAGCATACATGTAAAGGAAGGCACAATAAACAAGTTGCTATGCCCCGATGCAAAATGTGGAGTCCTGGTCCCACCTGGCTTGTTGAAACGTTTGCTTGGAAATGAAGAGTTTGAACGTTGGGAGTCATTATTGTTGCAGAAAACACTTGACTCAATGTCCGATATATCCTATTGCCCAAGATGTGAAACAGCATGCTTAGAAGATGAAGACCAGCATGCCCAATGCCCGAAGTGCTTCTTTAGCTTTTGTAGCCTTTGTAGAGAGCGGCGTCATGTAGGAATAGCATGTATGACACCAGAATTGAAGCTTCATATCTTGCAGGAGCGCCAGAATTCATCTCAACTCAAGAAGGACCAAAGACATAGGGAGCGTGAAATGATTAATGAGATTCTTAGTGTCAAGGAAATACTTCGTGATGCTAAGCAATGCCCATCTTGCAAGATGGCAATCTCCCGAACTGAAGGTTGCAACAAGATGGAATGCAAGAACTGTGGGCAGTTCTTTTGCTATCGATGTAACAAGGCAATTGACGGATATGGTCACTTCAGGGAAGATGGATGCGTCCTTTTCCCACGTGAAGCAATTCAGGAGTGGGAGGAGCGGATGAATGAACGCCAGGGGTTGGGTCAGATACAAGCTGAACTCTTTGCAGATCATGCTCACACATGCCCCAATTGTGGTCAAATGAATGCAAAGGTTGGGAATAACAACCACATCTTCTGCTGGTCTTGCCAAAGCCACTATTGCTACTTGTGTCTAAAGATTGTTCGGCGCAGCTCTCAGCATTATGGACCCAAGGGTTGCAGACAACACACAGTGGGATAA 2088 0.4406 MKKGRKGKQEQGLLQPVDENWTVKPLNQDDQDLTHQQQQQQQQQQQQQQRQQHQTPNFENQSSLLSDSQQNLDSSTIPISDFIPKTRRTPSNRRKYKGLSQNRRAHVTETPQFEVSSSLPSKEEMEEEEVEKSRDDGYTSESMTNPTEQLVEASQSFKEVKDIASRLEELTLATEEPELSEEQLRINNQLQEDELLAMEAIYGDSVFILNREGGLLSFQIRIHIEAPDELTISTKLHSSSEKVGFGGKSSDARTDNSNEFLYAFKVQYLPPVELTCLLPSTYPSHLPPYFTISVQWLDSMRISNLCHMLDLLWMDQPGQEVIYQWVEWLHSSSLSYLGIDKEIILGPYNIPDAGDSRAVSGSVYPDVDIPSIMNYNDEKCHDIFRKNLHECSICFSEYAGTEFIKLPCQHFFCWKCMETYSSIHVKEGTINKLLCPDAKCGVLVPPGLLKRLLGNEEFERWESLLLQKTLDSMSDISYCPRCETACLEDEDQHAQCPKCFFSFCSLCRERRHVGIACMTPELKLHILQERQNSSQLKKDQRHREREMINEILSVKEILRDAKQCPSCKMAISRTEGCNKMECKNCGQFFCYRCNKAIDGYGHFREDGCVLFPREAIQEWEERMNERQGLGQIQAELFADHAHTCPNCGQMNAKVGNNNHIFCWSCQSHYCYLCLKIVRRSSQHYGPKGCRQHTVG* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01170 695 CDD RING-HC_ITT1-like 388 441 - -
Eupl08g01170 695 Gene3D Ubiquitin Conjugating Enzyme 180 337 IPR016135 -
Eupl08g01170 695 FunFam RBR-type E3 ubiquitin transferase 386 470 - -
Eupl08g01170 695 Pfam IBR domain, a half RING-finger domain 558 597 IPR002867 GO:0008270
Eupl08g01170 695 Pfam IBR domain, a half RING-finger domain 459 517 IPR002867 GO:0008270
Eupl08g01170 695 ProSiteProfiles RWD domain profile. 193 336 IPR006575 GO:0005515
Eupl08g01170 695 MobiDBLite consensus disorder prediction 21 86 - -
Eupl08g01170 695 MobiDBLite consensus disorder prediction 103 119 - -
Eupl08g01170 695 ProSiteProfiles TRIAD supradomain profile. 387 614 IPR044066 -
Eupl08g01170 695 SUPERFAMILY UBC-like 187 331 IPR016135 -
Eupl08g01170 695 SMART ibrneu5 459 517 IPR002867 GO:0008270
Eupl08g01170 695 SMART ibrneu5 546 608 IPR002867 GO:0008270
Eupl08g01170 695 SUPERFAMILY RING/U-box 630 690 - -
Eupl08g01170 695 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 620 IPR031127 GO:0004842|GO:0016567
Eupl08g01170 695 Pfam RWD domain 189 331 IPR006575 GO:0005515
Eupl08g01170 695 CDD BRcat_RBR_RNF14 470 523 - -
Eupl08g01170 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 474 IPR013083 -
Eupl08g01170 695 SMART RWD2001b 193 336 IPR006575 GO:0005515
Eupl08g01170 695 SUPERFAMILY RING/U-box 386 472 - -
Eupl08g01170 695 SUPERFAMILY RING/U-box 459 521 - -
Eupl08g01170 695 ProSitePatterns Zinc finger RING-type signature. 408 417 IPR017907 -
Eupl08g01170 695 FunFam RBR-type E3 ubiquitin transferase 532 638 - -
Eupl08g01170 695 MobiDBLite consensus disorder prediction 120 138 - -
Eupl08g01170 695 CDD Rcat_RBR 644 675 - -
Eupl08g01170 695 FunFam RBR-type E3 ubiquitin transferase 179 338 - -
Eupl08g01170 695 SUPERFAMILY RING/U-box 551 602 - -
Eupl08g01170 695 ProSiteProfiles Zinc finger RING-type profile. 391 439 IPR001841 -
Eupl08g01170 695 SMART ring_2 391 438 IPR001841 -
Eupl08g01170 695 SMART ring_2 644 673 IPR001841 -
Eupl08g01170 695 SMART ring_2 479 567 IPR001841 -
Eupl08g01170 695 MobiDBLite consensus disorder prediction 1 144 - -
Eupl08g01170 695 Gene3D - 529 640 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01170 372 596 C3H Transcription Factor Family AT2G31770 25.738 9.76e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01170 K11971 - psom:113297414 985.711