Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01155 ATGAGAAAGGAACTTGTGCACGAGATGGAGGTGGCCGCCTCGGCCGATGCTGTTTGGGCAGTCTACAGCTCGCCTGGCCTGCCAAGGCTCGTCGCTCAATTACTTCCTACTGTATTTGAAAAGATTGAAATTGTGGAGGGCAACGGCGGTGTTGGTACCGTTTTGCACCTCACATTTCCTCCAGCATCAGTACCGCTTACTTACAAGGAGAAGTTCGTAACAATCGATGACAAGAAACGTCTGAAGGAGGTACTGCAGATCGAAGGAGGATATTTGGATCTAGGTTGTACTTTCTACATGGATAGTTTCCACATCATAGAGAAAGGTCGTGATTCATGCATCATCAAATCGACAACTGTCTACGAAGTCAAAGATGAACTAGCCAACCAGGTTGCTCCTCTCATTACTATTGATTCACTATCAAGCATGGCGGAAACTCTCTCAAAGTATGTTCTAGATCACCCCAAGGGACTTATTCGAAAGGAATTAGTACACGAGTTAGAGGTGGCCGCCCCAGCCGACGATGTTTGGGCGATCTACAGCTCGCCTGACCTGCCAAAACTCGTTGCCCAATTACTTCCTACTGTATTCGAAAAGATTGATGTTGTCGAGGGTAACGGAGGTGTTGGTACCGTTTTGCACCTTACATTTCCTCCAGGATCTGTACCACTTACTTACAAGGAGAAGTTCATGACAATTGATCACAAGAAACGTCTGAAGGAGGTACTGCAGATTGAAGGAGGATATTTGGATCTAGGGTGTACTTTTTATTTGGATAGCTTCCACATCTTAGAGAAAGGTCGTAATTCATGCATCATCAAATCGACAACTTTTTACGAAGTTAAAGCTGAGCTAGCTGACCAGGTTGCCCCTCTCATTACCATTGATTCATTGTCTAGCATGGCTGAAACTCTCTCAAAGTATGTTTTAGGGAAGCAAGCAATTATTCGAAAGGAACTTGTACACGAGTTGAAGGTGGCCGCATCAGCCGACGATGTTTGGGAAGTCTACAGCTCGCCTGACCTGCCAAAGCTCGTCGCCCAATTACTTCCTACTGTATTCGAAAAGATTGAAGTTGTGGAGGGTAACGGAGGTGTTGGTACTGTTTTGCACCTTACGTTTCCTCCAGGATCAGTACCACTTACTTACAAGGAGAAGTTCGTAACAATCGATCACAAGAAACGTCTAAAGGAGGTACTGCAGATCGAAGGAGGATATTTGGATCTAGGATGTACTTTCTATATGGATAGCTTCCTCATCACAGAGAAAGGTCGTAATTCATGCATCATCAAATCGATAACTGTCTACGAAGTCAAAGATGAACTAGCCGACAAGGTTGCTCCTCTCATTTCTATTGATTCACTATCTAGCATGGCTGACACTCTCTCAAAGTATGTTTTAGAGAAGCAACAAATTATTCGAAAGGATCTTGTACACAAGTTGAACGTGGCCGCCTCAGCCGACGCTGTTTGGGCAGTCTATAGCTCGCCTGACATGCCAAAGATTGTCGCCAAATTACTTCCTACTGTATTCGAAAAGATCGAAGTTGTGGAGGGTAACGGCGGAGATGTTGGTACCGTTTTGCAACTTACATTTCCTCCAGGATCAATACCACTTACTTACAAGGAGATGTTCATTACAATCGATCACAAGGAACGTCTGAAGGAGATACTGCAGACTGAAGGAGGATATTTGGAACTAGGGTGTACTTACTATGTGGATAGCTTCCGCATCATTGAGAAAGGGGCTAATTCATGCATCATCGAATCAACAACTGTGTACGAAGTCAAAGCATTGTACGCTGACAAGGTTGTACCTCTCATCACCATTGATTCACTGGCGAGCATGGCTGAAACTCTCTCAAAGTATGTTCTAGAAAAGCAACAAAATAGTCGCCGCCCCAATCGCCGGGAATCTGATCATCACCAAGGCAATCGTTGGGGTTCTGATAGCTGCGACGGTAGGGACTCTGATCGCTTCCGCGGCAAACATGGGAGCCCTGATAGCTGTGACGGTAAGGGCTCTGATCGCTTCCGCGGCAAACATGGGAGCCCTGATAGGTGCGATGGTAGGGACTCTGATCGCTTCCGGGGCAAACATGGGAGCCCTGATAGCTGTGGGAGCCCTGATAGCTGTGATGGTAGGGACTCTGATCGCTTCCGCGGCAAACATGGGAGTCCTGATAGGTGCGATGGTCTTCATTCATATGAGATTGCTAACAAAGAAATATGCTTGATGCTCAAGAACTTGGGACTCAATGCGATAGAAATAGAGTTCATGTTGGCAAATGTACAAATGATCTGGCAGAGGTTCTTATATTATGATTCTATTTTACTCGAGGCTGAGAGGCAAAAAAGTATTTCTGGTTGTGTGGATGATTGGGCTGTAGAGTTCTTAAGACTAAGTGAGGATGCTGTCTTTACCACGTTCATACAGCAGAGGCGATTTGAAACGACTGGAGGATGGAGAGGGAGAGATGTTTCACGTTCAAGAAAGGGAATAAACGTTCGTCATCATGCCGAAACTAAAAGACGACCCTTCAGCTCTTTGTTTCCTGATTTTCTTATAGTTTTTGCAGTAGAGGGACAGACCTTTCAGTTCAACATTGCAAATCCAACCACTGGTTGCCAGAAGAAACTGGAAATCGACGATGACCAGAAGCTCCGGGCCTTCTTTGACAAGAGGATCTCTCAAGAGGTTAGCGGAGATGCTCTGGGTGAGGAGTTCAAGGGTTACGTCTTCAAAATTATGGGAGGATGTGACAAACAGGGTTTCCCCATGAAGCAGGGAGTTTTGACTCCTGGCCGTGTCCGTCTGCTGTTGCACAGAGGAACACCTTGCTTCCGTGGTTACGGCAGGCGCAATGGAGAGCGCCGAAGGAAGTCCGTTCGCGGATGTATTGTTAGCCCTGACCTCTCGGTTTTGAACTTGGTTATTGTTAAGAAGGGAGAAAATGATCTGCCAGGCTTGACGGACGTAGAGAAGCCTAGGATGAGGGGTCCAAAGAGGGCCTCTAAGATCCGCAAGCTGTTCAACCTGTCAAAGGATGATGATGTGCGGAAGTATGTCAACACCTACCGAAGAACATTCACCACGAAATCTGGGAAAAAGTGCAGCAAGGCCCCCAAGATTCAGAGACTCGTGACTCCCCTGACGTTGCAGAGGAAGCGTGCCCGTATTGCTGAGAAGAAGAGGAGGATCGCAAAGGCCAAGTCAGAGGCTGCAGAGTACCAGAAGCTACTGGCCACTCGATTGAAAGAGCAACGTGAGCGGAGGAGCGAGAGCTTGGCCAAGAAGAGATCCCGTCTTTCTGCTGCCTCCAAGCCATCTGTTGTGGTTGCTTGA 3345 0.4682 MRKELVHEMEVAASADAVWAVYSSPGLPRLVAQLLPTVFEKIEIVEGNGGVGTVLHLTFPPASVPLTYKEKFVTIDDKKRLKEVLQIEGGYLDLGCTFYMDSFHIIEKGRDSCIIKSTTVYEVKDELANQVAPLITIDSLSSMAETLSKYVLDHPKGLIRKELVHELEVAAPADDVWAIYSSPDLPKLVAQLLPTVFEKIDVVEGNGGVGTVLHLTFPPGSVPLTYKEKFMTIDHKKRLKEVLQIEGGYLDLGCTFYLDSFHILEKGRNSCIIKSTTFYEVKAELADQVAPLITIDSLSSMAETLSKYVLGKQAIIRKELVHELKVAASADDVWEVYSSPDLPKLVAQLLPTVFEKIEVVEGNGGVGTVLHLTFPPGSVPLTYKEKFVTIDHKKRLKEVLQIEGGYLDLGCTFYMDSFLITEKGRNSCIIKSITVYEVKDELADKVAPLISIDSLSSMADTLSKYVLEKQQIIRKDLVHKLNVAASADAVWAVYSSPDMPKIVAKLLPTVFEKIEVVEGNGGDVGTVLQLTFPPGSIPLTYKEMFITIDHKERLKEILQTEGGYLELGCTYYVDSFRIIEKGANSCIIESTTVYEVKALYADKVVPLITIDSLASMAETLSKYVLEKQQNSRRPNRRESDHHQGNRWGSDSCDGRDSDRFRGKHGSPDSCDGKGSDRFRGKHGSPDRCDGRDSDRFRGKHGSPDSCGSPDSCDGRDSDRFRGKHGSPDRCDGLHSYEIANKEICLMLKNLGLNAIEIEFMLANVQMIWQRFLYYDSILLEAERQKSISGCVDDWAVEFLRLSEDAVFTTFIQQRRFETTGGWRGRDVSRSRKGINVRHHAETKRRPFSSLFPDFLIVFAVEGQTFQFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKRRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSVVVA* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01155 1114 ProSitePatterns Ribosomal protein S6e signature. 916 927 IPR018282 GO:0003735|GO:0005840|GO:0006412
Eupl08g01155 1114 SUPERFAMILY Bet v1-like 477 627 - -
Eupl08g01155 1114 CDD Bet_v1-like 318 441 - -
Eupl08g01155 1114 MobiDBLite consensus disorder prediction 1087 1101 - -
Eupl08g01155 1114 Coils Coil 1053 1080 - -
Eupl08g01155 1114 SUPERFAMILY Bet v1-like 162 310 - -
Eupl08g01155 1114 MobiDBLite consensus disorder prediction 711 728 - -
Eupl08g01155 1114 Gene3D - 469 629 IPR023393 -
Eupl08g01155 1114 Gene3D - 1 155 IPR023393 -
Eupl08g01155 1114 Gene3D - 156 312 IPR023393 -
Eupl08g01155 1114 Gene3D - 313 468 IPR023393 -
Eupl08g01155 1114 CDD Bet_v1-like 161 310 - -
Eupl08g01155 1114 Hamap 30S ribosomal protein S6e [rps6e]. 331 981 IPR020924 GO:0003735|GO:0005840|GO:0006412
Eupl08g01155 1114 Pfam Ribosomal protein S6e 865 992 IPR001377 GO:0003735|GO:0005840|GO:0006412
Eupl08g01155 1114 PANTHER 40S RIBOSOMAL PROTEIN S6 866 1104 IPR001377 GO:0003735|GO:0005840|GO:0006412
Eupl08g01155 1114 SMART Ribosomal_S6e_2 865 992 IPR001377 GO:0003735|GO:0005840|GO:0006412
Eupl08g01155 1114 MobiDBLite consensus disorder prediction 629 701 - -
Eupl08g01155 1114 Pfam Pathogenesis-related protein Bet v 1 family 161 310 IPR000916 GO:0006952
Eupl08g01155 1114 Pfam Pathogenesis-related protein Bet v 1 family 318 467 IPR000916 GO:0006952
Eupl08g01155 1114 Pfam Pathogenesis-related protein Bet v 1 family 2 152 IPR000916 GO:0006952
Eupl08g01155 1114 Pfam Pathogenesis-related protein Bet v 1 family 477 625 IPR000916 GO:0006952
Eupl08g01155 1114 CDD Bet_v1-like 477 627 - -
Eupl08g01155 1114 Gene3D - 997 1098 - -
Eupl08g01155 1114 MobiDBLite consensus disorder prediction 627 728 - -
Eupl08g01155 1114 CDD Bet_v1-like 3 154 - -
Eupl08g01155 1114 MobiDBLite consensus disorder prediction 1087 1114 - -
Eupl08g01155 1114 SUPERFAMILY Bet v1-like 319 469 - -
Eupl08g01155 1114 SUPERFAMILY Bet v1-like 4 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01155 Eupl-Chr8 31463500 31497318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01155 865 1109 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.951 5.61e-109 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01155 K02991 K13382 psom:113340282 728.398