Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01152 ATGAGCTCTGCAGGAGATTTTTCGGGGCATGATAGAGCAGAGAAGAACAACGATGAAGAAAAATACAAAGAAGAAAAAGAAAAAGAAGAAGGGAAGAAAACCCTTAAAGTTCCTTTTCTGAAACTTTTTGCCTTCGCAGACTTCTTAGATTACGTTCTAATGGCCCTCGGATCTCTGGGTGCTTGTCTTCATGGTGCTTCTGTGCCTATATTCTTTATTTTCTTCGGAAAACTAATAAATGTCATCGGTATCGCTTATCTTTTTCCGTCATTGGTTTCTCATAAAGTTGCCAAGTATGCGTTGGATTTTGTTTATTTGAGTATCGCTATATTATTTTCGTCATGGACAGAGGTTGCATGTTGGATGTATACCGGAGAAAGACAAGCAGCAAAGATGAGGATGGCGTATTTGAGATCCATGTTGAATCAGGATATTAGTGTCTTTGACACTGAAGCTTCGACAGGAGAGGTGATCGCTGCAATTACCAGTGATATTATTGTAGTTCAAGACGCCATTTCTGAGAAGGTTGGGAACTTCATGCATTATATAAGCCGTTTTATCGCGGGCTTTGCAATTGGGTTTGCGCGGGTATGGCAAATCAGTCTTGTTACATTGTCTATAGTCCCGATGATCGCCATTGCAGGCGGTTTATATGCGTATATAGCGACCGGTCTTATTGCGAGAGTAAGGAAATCCTATGTGAAGGCCGGAGAAATTGCAGAAGAGGTGATCGGGAATGTGAGAACTGTTCAAGCATTTGTGGGTGAAGAGAGGGCTGTAAAATCATACAGAACTGCTCTTTTGAAGACTTATAAGTATGGGAAAAAGGGAGGATTAGCCAAGGGTCTGGGCCTTGGATCTATGCACTCTGTACTCTTCTGTTCATGGGCATTGCTCGTTTGGTTCACTAGCATCATTGTTCATAAAAATATAGCAAACGGAGGCGAATCCTTCACCACCATGCTCAACGTCGTCATCGCCGGCCTGTCACTTGGGCAGGCAGCACCAAACATCTCTGCATTCATCCGAGCAAGAACCGCTGCGTACCCGATTTTCAAGATGATAGAGAGAAACACAGTTAGCAAATCAAGCTTAAGAACAGGCCGGACCCTACAAAAAGTGGAGGGGCACATGCAGTTTAAGAACGTATGTTTCAGTTACCCGTCTCGCCCCGATATGACGATATTCAATAAGCTTTGTCTCGATATACCTTCTGCAAAGATCGTCGCCCTTGTCGGAGGAAGTGGGTCCGGCAAGAGTACAGTGATCTCATTGATCGAACGCTTCTATGAGCCCCTTTCCGGAGAGATACTATTAGATGGGAATGACATTAGGGAGCTTGAGCTCAAGTGGCTTAGGCAGCAAATTGGGTTGGTTAATCAAGAGCCCGCCCTCTTCGCTACGAGCATCCGCGAGAACATCCTCTATGGGAAAGACGACGCCACCATCGACGAGATTACGCGTGCCGCAAAACTCTCTGAGGCAATATCTTTCATCAACAACCTTCCTGATAGATATGAAACTCAGGTAGGGGAGAGAGGGATACAATTATCCGGTGGACAGAAGCAACGGATCGCAATATCTCGAGCATTACTGAAGAACCCTTCAATCCTCCTCTTTGATGAAGCGACGAGCGCCCTCGATTCTGAGTCTGAGAAGAGTGTCCAAGAAGCGCTTGATCGTGTCATGGTAGGAAGGACTACAATTGTAGTGGCTCACCGCCTCTCCACCATACGTAATGCAGACATGATCGCTGTCGTCCAAGGTGGACGGATTGTGGAGACAGGTAGCCATGAGGAGCTCATGTCAGACCCAAACAGTGCCTATGCATCTCTTGTTCAGATCCAAGAGGCGGCTTCTTTGCACCATCACCCCTCAATGGGCCAGACCACAGGACGACCAATAAGCATGAAAAATTCACGAGAATTGTCTCACACAACGACGAGCTTTGGCGCCAGTTTCCGTTCCGAAAAAGAATCCATCATGGCTGCTGACGGCACCGAGACTGGAAAGCCAAAACCGGTATCGATGAGAAGATTGTATGCAATGGCAGCTCCTGAGTGGATCTTCGGCTTGTTAGGCACCATGGGCGCCATTGTAACTGGCGCGCAAATGCCGCTTTTCGCCCTTGGGGTCTCACAGGCTCTCGTTGCCTTGTACATGGACTGGGAGACAACACAGCATGAAATCAAGAAAATTGCACTCCTCTTCTGTGCTGGTGCCGTTCTCACGGTCATCTTTTACACCATCGAGCACTTCAGCTTCGGAATCATGGGCGAACGACTTACTCTTCGCGTGCGAGAGATGCTGTTTGCAGCCATATTGCGGAATGAAATCGGATGGTTTGATGAAATAAATAACAACAGCTCGATACTGTCGTCGCGACTAGAAGCCGATGCAACTCTGCTAAGAACGATAGTCGTTGATCGTTCTACGATCCTCTTACAAAATATATCTCTGGTCATCACATCATTCATCATCGCCTTCATCCTGAATTGGAGGATCACCCTTGTTGTTTTGGCCACCTATCCTCTGCTTGTGAGCGGACACATCAGCGAGAAATTGTTCATGCAAGGCTATGGCGGCAATTTGAGCAAGGCCTATCTCAAAGCTAACATGCTTGCCGGTGAGGCTGTTAGCAACATTCGAACTGTCGCTGCATTTTGTTCGGAAGACAAGGTTATCGAACTGTATGCTCGTGAGCTTGCCGAGCCCTCTAAGCGTGCTTTCCGTCGTGGTCAGATTGCAGGCATCTTCTATGGTGTGTCCCAATTCTTCCTCTTCTCGTCATACGGCCTCGCCTTATGGTATGGATCTGTCTTGATGGGGAAGGAGCTTGCCAGTTTTAAATCAATCATGAAATCGTTCATGGTGTTGATCGTAACTGCACTAGCCATGGGAGAGACACTAGCATTGGCCCCAGATCTCATAAAAGGGAACCAAATGGTGGCTTCTGTCTTTGAGCTGCTGGATAGGAAGACAGGTGTGGTAGGAGACGCCGGAGAGGAAGTGACTAAGGTAGAGGGCACAATTGAGCTGAGGGGTGTCGAGTTCAGTTACCCTTCAAGGCCGGACATTGTGATCTTCAAGGATTTTGATCTGAAAGTGCGGGCCGGCAAGAGCATGGCATTGGTGGGGTCAAGTGGGTCGGGTAAGAGCTCCGTGCTCGCTCTTATACTACGTTATTATGATCCAAGGGCGGGGAAGGTGATGATAGACGGAAAGGATATTAAGAAACTAAAGCTGAAATCCCTACGTAAACATATCGGCCTAGTCCAACAAGAACCGGCGTTATTCGCTACTTCGATCTATGAAAACATCATGTATGGAAAAGATGGAGCCTCGGAGTCGGAGGTCATCGAGGCTGCTAAGCTTGCTAATGCACACACCTTCATCAGTGGCCTACCTGAGGGTTACTCGACTAAGGTTGGGGAGCGAGGGGTGCAACTCTCTGGGGGACAGAAGCAACGGGTTGCTATCGCAAGAGCTGTTCTCAAGAACCCAGCAATCTTGCTACTAGACGAGGCAACTAGTGCTCTCGACGTAGAGTCCGAGCGGGTAGTCCAACAAGCCCTCGACAGGCTAATGAAGAGCCGAACTACAGTCATGGTGGCACACAGGTTGTCTACCATCAAGAATGCAGATTTGATATCGGTCTTGCAGGACGGGAAGATCATAGAACAAGGGACCCATTCTACTCTAGTAGAGAACAAGAATGGTGCGTACTATAGATTAATCAACTTACAACAGCAGCAACAACAACAATAA 3768 0.4737 MSSAGDFSGHDRAEKNNDEEKYKEEKEKEEGKKTLKVPFLKLFAFADFLDYVLMALGSLGACLHGASVPIFFIFFGKLINVIGIAYLFPSLVSHKVAKYALDFVYLSIAILFSSWTEVACWMYTGERQAAKMRMAYLRSMLNQDISVFDTEASTGEVIAAITSDIIVVQDAISEKVGNFMHYISRFIAGFAIGFARVWQISLVTLSIVPMIAIAGGLYAYIATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFVGEERAVKSYRTALLKTYKYGKKGGLAKGLGLGSMHSVLFCSWALLVWFTSIIVHKNIANGGESFTTMLNVVIAGLSLGQAAPNISAFIRARTAAYPIFKMIERNTVSKSSLRTGRTLQKVEGHMQFKNVCFSYPSRPDMTIFNKLCLDIPSAKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNDIRELELKWLRQQIGLVNQEPALFATSIRENILYGKDDATIDEITRAAKLSEAISFINNLPDRYETQVGERGIQLSGGQKQRIAISRALLKNPSILLFDEATSALDSESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADMIAVVQGGRIVETGSHEELMSDPNSAYASLVQIQEAASLHHHPSMGQTTGRPISMKNSRELSHTTTSFGASFRSEKESIMAADGTETGKPKPVSMRRLYAMAAPEWIFGLLGTMGAIVTGAQMPLFALGVSQALVALYMDWETTQHEIKKIALLFCAGAVLTVIFYTIEHFSFGIMGERLTLRVREMLFAAILRNEIGWFDEINNNSSILSSRLEADATLLRTIVVDRSTILLQNISLVITSFIIAFILNWRITLVVLATYPLLVSGHISEKLFMQGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEDKVIELYARELAEPSKRAFRRGQIAGIFYGVSQFFLFSSYGLALWYGSVLMGKELASFKSIMKSFMVLIVTALAMGETLALAPDLIKGNQMVASVFELLDRKTGVVGDAGEEVTKVEGTIELRGVEFSYPSRPDIVIFKDFDLKVRAGKSMALVGSSGSGKSSVLALILRYYDPRAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENIMYGKDGASESEVIEAAKLANAHTFISGLPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPAILLLDEATSALDVESERVVQQALDRLMKSRTTVMVAHRLSTIKNADLISVLQDGKIIEQGTHSTLVENKNGAYYRLINLQQQQQQQ* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01152 1255 Pfam ABC transporter 1030 1178 IPR003439 GO:0005524
Eupl08g01152 1255 ProSitePatterns ABC transporters family signature. 1150 1164 IPR017871 GO:0005524|GO:0016887
Eupl08g01152 1255 Pfam ABC transporter transmembrane region 59 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g01152 1255 Pfam ABC transporter transmembrane region 693 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g01152 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1247 IPR003439 GO:0005524
Eupl08g01152 1255 Gene3D - 1001 1255 IPR027417 -
Eupl08g01152 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 994 - -
Eupl08g01152 1255 SMART AAA_5 1038 1230 IPR003593 GO:0016887
Eupl08g01152 1255 SMART AAA_5 405 591 IPR003593 GO:0016887
Eupl08g01152 1255 FunFam ABC transporter B family member 4 368 623 - -
Eupl08g01152 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 54 351 - -
Eupl08g01152 1255 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Eupl08g01152 1255 MobiDBLite consensus disorder prediction 8 27 - -
Eupl08g01152 1255 CDD ABC_MTABC3_MDL1_MDL2 1011 1248 - -
Eupl08g01152 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 55 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g01152 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g01152 1255 PANTHER ABC TRANSPORTER B FAMILY 14 632 IPR039421 -
Eupl08g01152 1255 MobiDBLite consensus disorder prediction 1 27 - -
Eupl08g01152 1255 Pfam ABC transporter 398 545 IPR003439 GO:0005524
Eupl08g01152 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1249 IPR027417 -
Eupl08g01152 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Eupl08g01152 1255 CDD ABC_MTABC3_MDL1_MDL2 380 616 - -
Eupl08g01152 1255 Coils Coil 10 32 - -
Eupl08g01152 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Eupl08g01152 1255 SUPERFAMILY ABC transporter transmembrane region 42 348 IPR036640 GO:0005524|GO:0016020
Eupl08g01152 1255 Gene3D ABC transporter type 1, transmembrane domain 41 980 IPR036640 GO:0005524|GO:0016020
Eupl08g01152 1255 Gene3D - 368 617 IPR027417 -
Eupl08g01152 1255 SUPERFAMILY ABC transporter transmembrane region 674 992 IPR036640 GO:0005524|GO:0016020
Eupl08g01152 1255 FunFam ABC transporter B family member 19 1001 1250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01152 Eupl-Chr8 31409530 31421034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01152 24 1255 Calmodulin-binding Proteins AT2G36910 50.514 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01152 K05658 - msin:131232258 1974.13