Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01151 ATGGGGAGGCCTCCTATTTCTGATGAAAATGGTTTAAAGAAGGGTCCTTGGACGACTGAAGAAGATCAAAAGCTCGTTGATTACATACAGAAAAATGGCCATGGAAGCTGGAGAGCTCTTCCCAGACTTGCAGGATTGAACAGGTGTGGGAAGAGTTGCAGACTAAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGAGGAAAGTTTTCCAACGAAGAAGAGCAACTCATCATCAGCCTTCATTCTGTTCTTGGAAATAAGTGGTCTCAAATTGCAACCCATCTTCCAGGAAGGACTGATAATGAGATCAAGAACTTTTGGAACACCCATCTAAAGAAAAAACTCCTACAAATGGGTATCGATCCAATAACCCACAGGCCAAGAGCTGATCTCAATCTCCTTGCAAATCTACCTCATTTGTTAGCTGCTGCGAACATTAGCAATTTGATGAACCCTTGGGACAATGCTCTCAGGCTACAAGCTGATGCTGCACACTTGGCCAAAATCCAATTGTTGCAAAATCTACTTCAAGTCATAAGTAGTAGTGCTGCATCTCCAAATATGGAAGTAATTAATCCCTTGGGATCAGCTTCCATTAGGGATTATCTCCTAAACGACTACCTCCGATCGAATTCCCAAGTCGGAGGACTTGTTAATGGTCCTCTTGATCTTGCTCCTGATTCCACTCAAGCACCTTTTGATTTTTCGAATCTAGGAGCCCCGCAGCCGACCCATGATTATCAGACAATTGCAGATTCATGTGTTTATTTTGAAGGAGGGCCTAATTCAAAAGTGCTTAACAACAATAATAATCATTTGAGTAGTTCGTATGCTATTGCTCCTGCAAACCCTATTCCTGCATTGATTTCAGCCTCCCCAGAAAACAAGATCAACCCAACGGACATTTCCACCCACTCATCCACCTCAACCACCTTTGAAGCTTGGGGAGAACTTAATCTGGATGATGAAGACAATGACTATAACTGGACAGATATTATAGAACAAACAACTTCTCCATCTTGGCTGATCTCACAGTAA 1041 0.4246 MGRPPISDENGLKKGPWTTEEDQKLVDYIQKNGHGSWRALPRLAGLNRCGKSCRLRWTNYLRPDIKRGKFSNEEEQLIISLHSVLGNKWSQIATHLPGRTDNEIKNFWNTHLKKKLLQMGIDPITHRPRADLNLLANLPHLLAAANISNLMNPWDNALRLQADAAHLAKIQLLQNLLQVISSSAASPNMEVINPLGSASIRDYLLNDYLRSNSQVGGLVNGPLDLAPDSTQAPFDFSNLGAPQPTHDYQTIADSCVYFEGGPNSKVLNNNNNHLSSSYAIAPANPIPALISASPENKINPTDISTHSSTSTTFEAWGELNLDDEDNDYNWTDIIEQTTSPSWLISQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01151 346 Gene3D - 13 66 - -
Eupl08g01151 346 CDD SANT 69 112 IPR001005 -
Eupl08g01151 346 CDD SANT 16 61 IPR001005 -
Eupl08g01151 346 SMART sant 13 63 IPR001005 -
Eupl08g01151 346 SMART sant 66 114 IPR001005 -
Eupl08g01151 346 FunFam MYB-related transcription factor 13 66 - -
Eupl08g01151 346 Gene3D - 69 116 - -
Eupl08g01151 346 FunFam Transcription factor MYB39 69 130 - -
Eupl08g01151 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl08g01151 346 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl08g01151 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Eupl08g01151 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl08g01151 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl08g01151 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl08g01151 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl08g01151 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01151 Eupl-Chr8 31396591 31398306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01151 1 214 MYB Transcription Factor Family AT5G16770 65.625 3.25e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl08g01151 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01151 K09422 - ming:122083927 414.461