Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl08g01135 | ATGGATTACGGTGGAGAAGCCGGGTTTTCTGGCGTAAATGTTGGGCAGATGATCCCTGAAATCCAAGGCAGTGGCAGTGTCGACAATTGGATTCCGGGATTGAGTGATCAGGCAATTTGGGCAACGGAAGATGATTATGGCATATGGAATGGAGATGCCTCTGTCGACACTCCCTCCAACTCGAATTATGATGGAAGACAGTCCCAAACTCGATCTGGGAGTGAACCTCCCAACAAGAAATCGAGGAACTCTCAAGGAGGAGATTCGCAAGGGAGTGGGTTTAGTAGGGACCGTGATTTGTCCTCTGGTAATCGATCCAAAGCAATTGGAAAGATGTTTTTCAAAACCAAACTATGTTGCAAATTCCGCGCGGGTACTTGTCCTTACATCACTAACTGCAACTTTGCGCATGGAATTGAAGAGCTCCGTAAGCCGCCTCCGAATTGGCAAGAGATTGTGGCTGCCCAGGATGACGACCGGGGTGGGTCATCAGAGCCAAGGGAGGAGCATCAGATTCCGTCTCTTAGTTCTGCAGGTTTGGGTGGGGAGAGTCAGAGGTCCTACAAGGGGCGACATTGCAAGAAATTTTACACTGAAGAAGGCTGCCCTTATGGAGATAATTGCACTTTCCTTCATGATGAGCAGTCGAAAGCTCGGGAGAGTGTGGCGATAAGTTTGGGTCCCACTATTGGCAGTGGGTATGGAAACAACGGGAATGGATCGAGCCAGAAGCCTTCAAACTGGAAGACAAGGATTTGTAACAAGTGGGAGATGACGGGGTATTGCCCGTTCGGGAGCAAGTGCCATTTCGCTCACGGGTTAGGAGAACTGCACAGATATGGTGGGGGGCTTGTGGAGATGGACGGTAGAGATTCTTCTTCAGCTCCTCCAGACCCAAAGCAGGTTGGAGTTGCTTCAAAGACGCCGACGGATGCTGTGGTTGCATCTACCGCATCAGTTCCCCATACAGATGTTTATCACATGGGAGTTCCCACACAGAGGTCTTCAGGTGTAAACCAGAGGCCAGGACAGCGACCTCTTCAGAAATGGAAGGGCCCAGACAAGATCAGTAGGATATATGGTGACTGGATTGATGACAATGAATGGGAGCCAGCTCGATAA | 1122 | 0.5 | MDYGGEAGFSGVNVGQMIPEIQGSGSVDNWIPGLSDQAIWATEDDYGIWNGDASVDTPSNSNYDGRQSQTRSGSEPPNKKSRNSQGGDSQGSGFSRDRDLSSGNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHGIEELRKPPPNWQEIVAAQDDDRGGSSEPREEHQIPSLSSAGLGGESQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKARESVAISLGPTIGSGYGNNGNGSSQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGLGELHRYGGGLVEMDGRDSSSAPPDPKQVGVASKTPTDAVVASTASVPHTDVYHMGVPTQRSSGVNQRPGQRPLQKWKGPDKISRIYGDWIDDNEWEPAR* | 374 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl08g01135 | 373 | MobiDBLite | consensus disorder prediction | 156 | 186 | - | - | |
Eupl08g01135 | 373 | MobiDBLite | consensus disorder prediction | 288 | 352 | - | - | |
Eupl08g01135 | 373 | FunFam | zinc finger CCCH domain-containing protein 15-like | 241 | 280 | - | - | |
Eupl08g01135 | 373 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 248 | 273 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 114 | 138 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | ProSiteProfiles | Zinc finger C3H1-type profile. | 187 | 215 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | MobiDBLite | consensus disorder prediction | 53 | 99 | - | - | |
Eupl08g01135 | 373 | MobiDBLite | consensus disorder prediction | 51 | 103 | - | - | |
Eupl08g01135 | 373 | ProSiteProfiles | Zinc finger C3H1-type profile. | 113 | 140 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | FunFam | Zinc finger, CCCH-type | 181 | 219 | - | - | |
Eupl08g01135 | 373 | ProSiteProfiles | Zinc finger C3H1-type profile. | 247 | 275 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 241 | 294 | IPR045877 | GO:0003729 | |
Eupl08g01135 | 373 | MobiDBLite | consensus disorder prediction | 329 | 343 | - | - | |
Eupl08g01135 | 373 | Pfam | CCCH-type zinc finger | 191 | 213 | IPR041367 | - | |
Eupl08g01135 | 373 | SMART | c3hfinal6 | 247 | 274 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | SMART | c3hfinal6 | 113 | 139 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | SMART | c3hfinal6 | 187 | 214 | IPR000571 | GO:0046872 | |
Eupl08g01135 | 373 | FunFam | Zinc finger CCCH domain-containing protein | 109 | 144 | - | - | |
Eupl08g01135 | 373 | Gene3D | - | 241 | 279 | - | - | |
Eupl08g01135 | 373 | Gene3D | - | 109 | 144 | - | - | |
Eupl08g01135 | 373 | SUPERFAMILY | CCCH zinc finger | 186 | 215 | IPR036855 | GO:0046872 | |
Eupl08g01135 | 373 | Gene3D | - | 181 | 227 | - | - | |
Eupl08g01135 | 373 | SUPERFAMILY | CCCH zinc finger | 244 | 278 | IPR036855 | GO:0046872 | |
Eupl08g01135 | 373 | SUPERFAMILY | CCCH zinc finger | 111 | 144 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl08g01135 | Eupl-Chr8 | 31166943 | 31170282 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl08g01135 | 249 | 277 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 2.61e-07 | 50.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Eupl08g01135 | zf-CCCH | 3.8e-11 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl08g01135 | - | - | nnu:104585631 | 710.679 |