Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01135 ATGGATTACGGTGGAGAAGCCGGGTTTTCTGGCGTAAATGTTGGGCAGATGATCCCTGAAATCCAAGGCAGTGGCAGTGTCGACAATTGGATTCCGGGATTGAGTGATCAGGCAATTTGGGCAACGGAAGATGATTATGGCATATGGAATGGAGATGCCTCTGTCGACACTCCCTCCAACTCGAATTATGATGGAAGACAGTCCCAAACTCGATCTGGGAGTGAACCTCCCAACAAGAAATCGAGGAACTCTCAAGGAGGAGATTCGCAAGGGAGTGGGTTTAGTAGGGACCGTGATTTGTCCTCTGGTAATCGATCCAAAGCAATTGGAAAGATGTTTTTCAAAACCAAACTATGTTGCAAATTCCGCGCGGGTACTTGTCCTTACATCACTAACTGCAACTTTGCGCATGGAATTGAAGAGCTCCGTAAGCCGCCTCCGAATTGGCAAGAGATTGTGGCTGCCCAGGATGACGACCGGGGTGGGTCATCAGAGCCAAGGGAGGAGCATCAGATTCCGTCTCTTAGTTCTGCAGGTTTGGGTGGGGAGAGTCAGAGGTCCTACAAGGGGCGACATTGCAAGAAATTTTACACTGAAGAAGGCTGCCCTTATGGAGATAATTGCACTTTCCTTCATGATGAGCAGTCGAAAGCTCGGGAGAGTGTGGCGATAAGTTTGGGTCCCACTATTGGCAGTGGGTATGGAAACAACGGGAATGGATCGAGCCAGAAGCCTTCAAACTGGAAGACAAGGATTTGTAACAAGTGGGAGATGACGGGGTATTGCCCGTTCGGGAGCAAGTGCCATTTCGCTCACGGGTTAGGAGAACTGCACAGATATGGTGGGGGGCTTGTGGAGATGGACGGTAGAGATTCTTCTTCAGCTCCTCCAGACCCAAAGCAGGTTGGAGTTGCTTCAAAGACGCCGACGGATGCTGTGGTTGCATCTACCGCATCAGTTCCCCATACAGATGTTTATCACATGGGAGTTCCCACACAGAGGTCTTCAGGTGTAAACCAGAGGCCAGGACAGCGACCTCTTCAGAAATGGAAGGGCCCAGACAAGATCAGTAGGATATATGGTGACTGGATTGATGACAATGAATGGGAGCCAGCTCGATAA 1122 0.5 MDYGGEAGFSGVNVGQMIPEIQGSGSVDNWIPGLSDQAIWATEDDYGIWNGDASVDTPSNSNYDGRQSQTRSGSEPPNKKSRNSQGGDSQGSGFSRDRDLSSGNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHGIEELRKPPPNWQEIVAAQDDDRGGSSEPREEHQIPSLSSAGLGGESQRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKARESVAISLGPTIGSGYGNNGNGSSQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGLGELHRYGGGLVEMDGRDSSSAPPDPKQVGVASKTPTDAVVASTASVPHTDVYHMGVPTQRSSGVNQRPGQRPLQKWKGPDKISRIYGDWIDDNEWEPAR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01135 373 MobiDBLite consensus disorder prediction 156 186 - -
Eupl08g01135 373 MobiDBLite consensus disorder prediction 288 352 - -
Eupl08g01135 373 FunFam zinc finger CCCH domain-containing protein 15-like 241 280 - -
Eupl08g01135 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 273 IPR000571 GO:0046872
Eupl08g01135 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 138 IPR000571 GO:0046872
Eupl08g01135 373 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Eupl08g01135 373 MobiDBLite consensus disorder prediction 53 99 - -
Eupl08g01135 373 MobiDBLite consensus disorder prediction 51 103 - -
Eupl08g01135 373 ProSiteProfiles Zinc finger C3H1-type profile. 113 140 IPR000571 GO:0046872
Eupl08g01135 373 FunFam Zinc finger, CCCH-type 181 219 - -
Eupl08g01135 373 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Eupl08g01135 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 241 294 IPR045877 GO:0003729
Eupl08g01135 373 MobiDBLite consensus disorder prediction 329 343 - -
Eupl08g01135 373 Pfam CCCH-type zinc finger 191 213 IPR041367 -
Eupl08g01135 373 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Eupl08g01135 373 SMART c3hfinal6 113 139 IPR000571 GO:0046872
Eupl08g01135 373 SMART c3hfinal6 187 214 IPR000571 GO:0046872
Eupl08g01135 373 FunFam Zinc finger CCCH domain-containing protein 109 144 - -
Eupl08g01135 373 Gene3D - 241 279 - -
Eupl08g01135 373 Gene3D - 109 144 - -
Eupl08g01135 373 SUPERFAMILY CCCH zinc finger 186 215 IPR036855 GO:0046872
Eupl08g01135 373 Gene3D - 181 227 - -
Eupl08g01135 373 SUPERFAMILY CCCH zinc finger 244 278 IPR036855 GO:0046872
Eupl08g01135 373 SUPERFAMILY CCCH zinc finger 111 144 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01135 Eupl-Chr8 31166943 31170282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01135 249 277 C3H Transcription Factor Family AT1G68200 62.069 2.61e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl08g01135 zf-CCCH 3.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01135 - - nnu:104585631 710.679