Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g01133 ATGTCGACCGTCCACCATTCCCAATCGAAATCCGATACGTCGCACATTAACAGCCATCCTATACCTATAATTGTCACTGTCATCCTCATTTTCTTCTTCATCGGCTTCTTCTCTATCTACGTTTGCCGTTGTTTCACAGGATATGTAACCAATGCCAATTGGCTCTTTCGTCGTACTTCCTCTGGCAATGCTGTCGGACAAAGAGTCTCCTCCCGTCATGGCCTTGACCCTTCAATTGTGTCGTCCTTTCCCACGTTCATGTACTCTGTCGTGAAACATCTTCAACAAGATAAGACTGGTCTAGAATGCGCTGTATGCTTATCGGAGTTCGAAGACAACGACGTCCTGCGCCTCCTGACCATCTGCAGCCATGCGTTCCATCCAGAATGCATTGATCTCTGGTTCGAGTCACACACCACCTGTCCTGTCTGCCGACGTAATCTCAACCCATCGGATAAATCTCCGGATAAATCACCAGAAATCAGTTTCACAATGCCCGAAACTGATGAACGTGAGGATGAGCCAGGAGATTGTAGTCATAGAATTTCTGTTAAGGATGATGATGAGGAGAGAGGGGACAGAAATGAGGGTGTGACTGCTGACATTGAAGGAGGAGTCGGAGGACACACGGCGGTGGAGAAGTTCCCGAGGTCCCACTCGACAGGGCATTCGATTGTAGGAGGGGACGATAGGTTTATGTTGAGATTACCAAAGAATGTGAAGGAGCAGCTCACAAGGGGACATAGTTCTGCAGGGAGTTGCATTACGTTTGGGGATTTTTCAGGCAACATCACCGTCGGAAAAGCTGGTCTTGACGAGCTTTCAGGGTATTCCAGCGGCAACGTCGCCAGAGTGTCTGACGTTGGATTGTCCGGTTTGGACTGA 885 0.4881 MSTVHHSQSKSDTSHINSHPIPIIVTVILIFFFIGFFSIYVCRCFTGYVTNANWLFRRTSSGNAVGQRVSSRHGLDPSIVSSFPTFMYSVVKHLQQDKTGLECAVCLSEFEDNDVLRLLTICSHAFHPECIDLWFESHTTCPVCRRNLNPSDKSPDKSPEISFTMPETDEREDEPGDCSHRISVKDDDEERGDRNEGVTADIEGGVGGHTAVEKFPRSHSTGHSIVGGDDRFMLRLPKNVKEQLTRGHSSAGSCITFGDFSGNITVGKAGLDELSGYSSGNVARVSDVGLSGLD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g01133 294 SMART ring_2 103 144 IPR001841 -
Eupl08g01133 294 CDD RING-H2_EL5-like 102 145 - -
Eupl08g01133 294 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Eupl08g01133 294 MobiDBLite consensus disorder prediction 163 198 - -
Eupl08g01133 294 SUPERFAMILY RING/U-box 97 151 - -
Eupl08g01133 294 PANTHER RING FINGER DOMAIN-CONTAINING 17 154 - -
Eupl08g01133 294 MobiDBLite consensus disorder prediction 147 226 - -
Eupl08g01133 294 Pfam Ring finger domain 102 145 IPR001841 -
Eupl08g01133 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Eupl08g01133 294 FunFam E3 ubiquitin-protein ligase ATL6 63 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g01133 Eupl-Chr8 31158019 31166367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g01133 23 246 Rapid Response to Elicitors AT3G05200 38.494 7.90e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g01133 - - nnu:104608800 278.1